Browse Element(s) Details


Os.17349.1.S1_s_at

Description gb:BI812665
DB_XREF= gi:16578570
DB_XREF=F008D02
CLONE=F008D02
TID=Os.17349.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17349 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0180011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17349.1.S1_s_at--544--2852Chr01:446673..446697 (25 bp)
AAGTCCTAGGATGCTCTGGAAATAT
NONE
Os.17349.1.S1_s_at--503--10092Chr01:446679..446703 (25 bp)
TAGGATGCTCTGGAAATATTCCCTG
NONE
Os.17349.1.S1_s_at--626--511Chr01:428092..428116 (25 bp)
ATCGTAGGGTAGTGACCATCATCAG
LOC_Os01g01800
Os.17349.1.S1_s_at--57--10091Chr01:428096..428120 (25 bp)
TAGGGTAGTGACCATCATCAGTTCA
LOC_Os01g01800
Os.17349.1.S1_s_at--812--3531Chr01:428108..428132 (25 bp)
CATCATCAGTTCACGGGTGACCTCC
LOC_Os01g01800
Os.17349.1.S1_s_at--500--1211Chr01:428115..428139 (25 bp)
AGTTCACGGGTGACCTCCCTGCCTG
LOC_Os01g01800
Os.17349.1.S1_s_at--899--7691Chr01:428122..428146 (25 bp)
GGGTGACCTCCCTGCCTGCTGGTTA
LOC_Os01g01800
Os.17349.1.S1_s_at--1140--8911Chr01:428125..428149 (25 bp)
TGACCTCCCTGCCTGCTGGTTACTT
LOC_Os01g01800
Os.17349.1.S1_s_at--492--291Chr01:428180..428204 (25 bp)
ATAGCAGTACCTGAACATGTATACA
LOC_Os01g01800
Os.17349.1.S1_s_at--561--5031Chr01:428183..428207 (25 bp)
GCAGTACCTGAACATGTATACAAGT
LOC_Os01g01800
Os.17349.1.S1_s_at--197--6992Chr01:428186..428210 (25 bp)
GTACCTGAACATGTATACAAGTATA
LOC_Os01g01800
Target Sequence 
AAGTCCTAGGATGCTCTGGAAATATTCCCTGTATCGTAGGGTAGTGACCATCATCAGTTCACGGGTGACCTCCCTGCCTG
CTGGTTACTTCCACGAGCTTGCATTTTGGAGATGATGCATAGCAGTACCTGAACATGTATACAAGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17349.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis