Browse Element(s) Details


OsAffx.10825.1.S1_s_at

Description gb:NM_183501.1
DB_XREF= gi:34894129
GEN=P0005A05.30
TID=OsAffx.10825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0005A05.30 (P0005A05.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0182011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10825.1.S1_s_at--1029--7931Chr01:433693..433717 (25 bp)
GGATTTCTCAACTTGTGGCAAGCAA
LOC_Os01g01820
OsAffx.10825.1.S1_s_at--997--6153Chr06:20398735..20398759 (25 bp)
GAGGTTATCCTGTCAAGTGCTGGTA
NONE
OsAffx.10825.1.S1_s_at--193--451Chr01:433434..433458 (25 bp)
ATCTGTTGGATGCTTTCCAGGCGGA
LOC_Os01g01820
OsAffx.10825.1.S1_s_at--208--9231Chr01:433419..433443 (25 bp)
TCCAGGCGGAAGTTGTTGCGTGCTT
LOC_Os01g01820
OsAffx.10825.1.S1_s_at--1133--3213Chr06:20398817..20398841 (25 bp)
CAAGGGCCGCGAATGCACTAGGAAT
NONE
OsAffx.10825.1.S1_s_at--405--5292Chr04:4335672..4335696 (25 bp)
GAATGGGCCATGTCGTTTTTGAAAC
NONE
OsAffx.10825.1.S1_s_at--495--4512Chr06:20398895..20398918 (24 bp)
GCCGATGATCACAGACTTGCAGCAA
NONE
OsAffx.10825.1.S1_s_at--250--10672Chr04:4335536..4335560 (25 bp)
TTCCTTTGTTTTTGCGCCACGAGAA
NONE
OsAffx.10825.1.S1_s_at--292--6093Chr08:8495980..8496004 (25 bp)
GAGTAGCGCATGCTTTAGCAGCTTT
NONE
OsAffx.10825.1.S1_s_at--965--4874Chr08:8496000..8496024 (25 bp)
GCTTTGGGTTGTAAATGTCCTCGGA
NONE
OsAffx.10825.1.S1_s_at--699--2972Chr04:4335447..4335471 (25 bp)
AATGGGACATGATGCCTCCGGGCAT
NONE
Target Sequence 
GGATTTCTCAACTTGTGGCAAGCAACAAAGAGTCCACAACGATTCACAAGAATGCAACAGATTTTGTAAGGTGCAGACCT
GCTGTGGGTAAACTGAAGATAAATTCTGATGGAGCATATATAGCTGAAACAGGGGAAGGAGGATGGGGTTTTGTAATTCG
GGATTCGGAGGGAGAGGTTATCCTGTCAAGTGCTGGTAGAATATCTTATCTGTTGGATGCTTTCCAGGCGGAAGTTGTTG
CGTGCTTGGCCGGAGCAAGGGCCGCGAATGCACTAGGAATGGGCCATGTCGTTTTTGAAACTGATTCCATTATCTTGAAG
CAAGCTATGGATGCCGATGATCACAGACTTGCAGCAACGGGTGGCTTGATTTATGAATTGAAGAAGCTGATCGGAAGTAG
TTTCCTTTCTTGTTCCTTTGTTTTTGCGCCACGAGAATGTAATAGAGTAGCGCATGCTTTAGCAGCTTTGGGTTGTAAAT
GTCCTCGGAATACTGTTGAACAATGGGACATGATGCCTCCGGGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10825.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis