Browse Element(s) Details


Os.20415.1.S1_at

Description gb:AK100813.1
DB_XREF= gi:32986022
TID=Os.20415.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121P16, full insert sequence.
FL= gb:AK100813.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0180010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01760OsAffx.22944.4.S1_at11/111+400494..401204hypothetical protein
LOC_Os01g01760OsAffx.22944.2.S1_s_at11/111+400494..401204hypothetical protein
LOC_Os01g01770OsAffx.10822.1.S1_at11/111+406502..407620exonuclease family protein, putative
LOC_Os01g01780Os.34815.2.S1_x_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01780Os.34815.1.S1_at11/111+409427..412625exostosin family protein, putative, expressed
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20415.1.S1_at--409--1411NONE
AGAAAATGCACTGCCGCGGGATACC
NONE
Os.20415.1.S1_at--140--4671Chr01:427071..427095 (25 bp)
GCGGGATACCATTGTTCTGGTTTTA
LOC_Os01g01800
Os.20415.1.S1_at--229--10372Chr01:446381..446405 (25 bp)
TTTTCTTCAAGTAGGTTTGGCTCCT
NONE
Os.20415.1.S1_at--297--8332Chr01:446399..446423 (25 bp)
GGCTCCTATACCGTGGTGTATAATT
NONE
Os.20415.1.S1_at--763--272Chr01:446464..446488 (25 bp)
ATAGGTTTGGCATATTCTTTCGGCT
NONE
Os.20415.1.S1_at--575--232Chr01:446475..446499 (25 bp)
ATATTCTTTCGGCTGTATCTTCTGC
NONE
Os.20415.1.S1_at--93--12Chr01:446515..446539 (25 bp)
GCGATTTAAACACAAGGGCCCCAGG
NONE
Os.20415.1.S1_at--432--7752Chr01:427919..427943 (25 bp)
GGTGATGGGAGTTTTCTTCTTCTTA
LOC_Os01g01800
Os.20415.1.S1_at--73--2112Chr01:446582..446606 (25 bp)
ACATGAGTTTTGTCGTTGCAAGGGA
NONE
Os.20415.1.S1_at--788--2672Chr01:446610..446634 (25 bp)
AAGCGTGCCGCTGATTAGAATTGAA
NONE
Os.20415.1.S1_at--387--7891Chr01:428142..428166 (25 bp)
GGTTACTTCCAACGAGCTTGCAATT
LOC_Os01g01800
Target Sequence 
AGAAAATGCACTGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATGGCTGTTGAGAAGAGGAGAGGAA
GAAAGAAGAGCCTTTTCTTCAAGTAGGTTTGGCTCCTATACCGTGGTGTATAATTTGTATTCGTGATTGGCTGGATGTAT
GTAATTAAGCGGGTGATAGGTTTGGCATATTCTTTCGGCTGTATCTTCTGCTGTAAAGGACCATAGGCGATTTAAACACA
AGGGCCCCAGGTGATGGGAGTTTTCTTCTTCTTATTTTTTTCCCTTATTCCTTTTAGAAACATGAGTTTTGTCGTTGCAA
GGGATGGAAGCGTGCCGCTGATTAGAATTGAAGCTAATTTANGCTAATAGAATGGAAAAGATAAATAGGCAAGTCCTAGG
ATGCTCTGGAAATATTCCCTGCATCGTAGGGTAGTGACCATCATCAGTTCACGGGTGACCTCCCTGCCTGCTGGTTACTT
CCAACGAGCTTGCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20415.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis