Browse Element(s) Details


Os.15541.2.S1_x_at

Description gb:AK101672.1
DB_XREF= gi:32986881
TID=Os.15541.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15541 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative prolyl endopeptidase (P0482C06.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033058D20, full insert sequence.
FL= gb:AK101672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0183011/11Prolyl endopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01790Os.38048.1.S1_a_at11/111+413043..417299expressed protein
LOC_Os01g01790Os.38048.2.S1_x_at10/111+413043..417299expressed protein
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004287molecular_functionprolyl oligopeptidase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15541.2.S1_x_at--273--7531Chr01:442219..442243 (25 bp)
GTGGACTGATATTCTTCCTGAACAT
LOC_Os01g01830
Os.15541.2.S1_x_at--164--4791Chr01:442255..442279 (25 bp)
GCTCGAATCAGCTGACGCGGTTAAT
LOC_Os01g01830
Os.15541.2.S1_x_at--817--5831Chr01:442337..442361 (25 bp)
GACCTTGTAACTGGGAACTTGCTTC
LOC_Os01g01830
Os.15541.2.S1_x_at--245--2071Chr01:442353..442377 (25 bp)
ACTTGCTTCATAAGTTGCCTCTAGA
LOC_Os01g01830
Os.15541.2.S1_x_at--24--6731Chr01:442383..442407 (25 bp)
GTTCTGTTTCAGAGATCTCCTGTAG
LOC_Os01g01830
Os.15541.2.S1_x_at--1112--811Chr01:442418..442442 (25 bp)
ATGGACGTCTTTATTGGCTTCACAA
LOC_Os01g01830
Os.15541.2.S1_x_at--600--3231Chr01:442440..442464 (25 bp)
CAAGCTTTCTTTCCCCTGGTATTAT
LOC_Os01g01830
Os.15541.2.S1_x_at--159--2131Chr01:442467..442491 (25 bp)
ACAGGTGTAACCTCACATCTGCGAT
LOC_Os01g01830
Os.15541.2.S1_x_at--1108--7951Chr01:442743..442767 (25 bp)
GGATCACATCCAACTTTGCTATATG
LOC_Os01g01830
Os.15541.2.S1_x_at--35--2091Chr01:442783..442807 (25 bp)
ACATAAGTCTTACTCCTTCTTTCAG
LOC_Os01g01830
Os.15541.2.S1_x_at--799--3811Chr01:442795..442819 (25 bp)
CTCCTTCTTTCAGTGTTAGTCGTGT
LOC_Os01g01830
Target Sequence 
GTGGACTGATATTCTTCCTGAACATGAAAGAGATGTGCTCGAATCAGCTGACGCGGTTAATGGTAACCAGTTATTGGTAT
GTTATATGTCAGATGTTAAGCATATTCTGCAGATAAGAGACCTTGTAACTGGGAACTTGCTTCATAAGTTGCCTCTAGAA
ATTGGTTCTGTTTCAGAGATCTCCTGTAGACGGGAAGACATGGACGTCTTTATTGGCTTCACAAGCTTTCTTTCCCCTGG
TATTATTTACAGGTGTAACCTCACATCTGCGATCCCAGAAATGAAGATATTTCGTGAAATTTCAGTTCCTGGATTTGATC
GAACAAATTTTGAGGTTAAGCAGATTTTCGTCAATAGTAAGGGTGGAACCAAAATTCCTATGTTCATAATGTCAAAGAGA
GATATTGAACTTGATGGATCACATCCAACTTTGCTATATGGTTATGGTGGATTCAACATAAGTCTTACTCCTTCTTTCAG
TGTTAGTCGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15541.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis