Browse Element(s) Details


OsAffx.1884.1.S1_at

Description tigr:9629.m00090
TID=OsAffx.1884.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g018409/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01800Os.17349.1.S1_s_at11/111+419329..428236expressed protein
LOC_Os01g01800Os.20415.1.S1_at10/111+419329..428236expressed protein
LOC_Os01g01810OsAffx.10645.1.S1_at3/111+429237..429554hypothetical protein
LOC_Os01g01820OsAffx.10825.1.S1_s_at11/111+433097..437330hypothetical protein
LOC_Os01g01820OsAffx.10825.2.S1_at11/111+433097..437330hypothetical protein
LOC_Os01g01830Os.15541.2.S1_x_at11/111+438130..444133Prolyl endopeptidase, putative, expressed
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1884.1.S1_at--405--5711NONE
GACTACGGGCATTGTATACTGCTCT
NONE
OsAffx.1884.1.S1_at--673--7591NONE
GGGCATTGTATACTGCTCTTGCAAC
NONE
OsAffx.1884.1.S1_at--979--6871Chr01:455980..456004 (25 bp)
GTATACTGCTCTTGCAACGTGGAGT
LOC_Os01g01840
OsAffx.1884.1.S1_at--778--1971Chr01:455984..456008 (25 bp)
ACTGCTCTTGCAACGTGGAGTAAGG
LOC_Os01g01840
OsAffx.1884.1.S1_at--1091--9011Chr01:455992..456016 (25 bp)
TGCAACGTGGAGTAAGGACACATAT
LOC_Os01g01840
OsAffx.1884.1.S1_at--85--2071Chr01:456011..456035 (25 bp)
ACATATATAGCTCCAACTTCTAAGT
LOC_Os01g01840
OsAffx.1884.1.S1_at--350--291Chr01:456017..456041 (25 bp)
ATAGCTCCAACTTCTAAGTTTGGTG
LOC_Os01g01840
OsAffx.1884.1.S1_at--430--3711Chr01:456030..456054 (25 bp)
CTAAGTTTGGTGTTGGGTCTGGAGT
LOC_Os01g01840
OsAffx.1884.1.S1_at--618--8331Chr01:457387..457411 (25 bp)
GGCGTCCGGGATGTCACTGTCCTGA
LOC_Os01g01840
OsAffx.1884.1.S1_at--861--7991Chr01:457395..457419 (25 bp)
GGATGTCACTGTCCTGATGAATCGA
LOC_Os01g01840
OsAffx.1884.1.S1_at--35--7111Chr01:457399..457423 (25 bp)
GTCACTGTCCTGATGAATCGACAGA
LOC_Os01g01840
Target Sequence 
GACTACGGGCATTGTATACTGCTCTTGCAACGTGGAGTAAGGACACATATATAGCTCCAACTTCTAAGTTTGGTGTTGGG
TCTGGAGTGGAGTTGAGCTCTCCATGGGTGCCGGTGTGGTCGGATGCGGCGGCGGGTGGTGGCGGTGGAGATGCGAGATC
CGAAGACCGGTGGATGAATCGACGGAAAAGGCTGGTTCCTTGCGGCGGCGGCGGCGGCTACATCGTCGTCGGCAATCGGG
AGAAGCCGGCTCCTTGCGGCGGCGCCAGTTGCTTCGTCGTCGGCGTCCGGGATGTCACTGTCCTGATGAATCGACAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis