Browse Element(s) Details


Os.30044.1.S1_a_at

Description gb:AK109432.2
DB_XREF= gi:42821746
TID=Os.30044.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0482C06.20 (P0482C06.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A12, full insert sequence.
FL= gb:AK109432.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0187011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01840Os.10300.1.S1_x_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.10300.1.S1_at11/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_x_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840OsAffx.1884.1.S1_at9/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01840Os.27662.1.S1_at1/111+452314..457518Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30044.1.S1_a_at--716--7731Chr01:477389..477413 (25 bp)
GGTGGTGAACGCCAGCTTCTCCGTC
LOC_Os01g01870
Os.30044.1.S1_a_at--63--2631Chr01:477504..477528 (25 bp)
AACCTCCTCCTCCAATATTAATTCA
LOC_Os01g01870
Os.30044.1.S1_a_at--1125--3311Chr01:477532..477556 (25 bp)
CACTCTTTCACTCTGCTCAGAATGA
LOC_Os01g01870
Os.30044.1.S1_a_at--534--2011Chr01:477570..477594 (25 bp)
ACTCTACTCTACTCTGTACTGTGAT
LOC_Os01g01870
Os.30044.1.S1_a_at--33--6091Chr01:477610..477634 (25 bp)
GAGTAGCAGACCAGAGAGCCTCTAG
LOC_Os01g01870
Os.30044.1.S1_a_at--21--5871Chr01:477625..477649 (25 bp)
GAGCCTCTAGGTAGCTAGGTTAATT
LOC_Os01g01870
Os.30044.1.S1_a_at--31--7651Chr01:477694..477718 (25 bp)
GGGAGCAAGCTGTTATTACTACTAA
LOC_Os01g01870
Os.30044.1.S1_a_at--340--9171Chr01:477757..477781 (25 bp)
TGCCCTACGTATATGTCTCCAGTCT
LOC_Os01g01870
Os.30044.1.S1_a_at--444--271Chr01:477767..477791 (25 bp)
ATATGTCTCCAGTCTATCATGTAGG
LOC_Os01g01870
Os.30044.1.S1_a_at--610--8671Chr01:477812..477836 (25 bp)
TGTGTGAGTGTTCTCTTTTGTGCCT
LOC_Os01g01870
Os.30044.1.S1_a_at--922--7871Chr01:477876..477900 (25 bp)
GGTTTACTGCATGCTCTCTAGCCTC
LOC_Os01g01870
Target Sequence 
GGTGGTGAACGCCAGCTTCTCCGTCGTCGGCGACAAGATCTTNTACACTCTCCACTCCCAGGCGCTCTGCTCCAGGATCG
GCCTCGACGCCTCCAGGGTCTCCCACAGGCTGCGCAACCTCCTCCTCCAATATTAATTCACACCACTCTTTCACTCTGCT
CAGAATGAGATAATACTCTCTACTCTACTCTACTCTGTACTGTGATGATAAGAAGTATAAAGAGTAGCAGACCAGAGAGC
CTCTAGGTAGCTAGGTTAATTAGTGAGAAACAAGAGTTTACACTAAGCTAATGGATGGCATGAGCGGGAGCAAGCTGTTA
TTACTACTAANTNTTGGCTAACGTTTTTGNATCCCCTAGCTAGCTGCCTGCCCTACGTATATGTCTCCAGTCTATCATGT
AGGAGTACTCCAGTAGTATACTGTGTGTGAGTGTTCTCTTTTGTGCCTGAAATTAATCCAGTNNNATGTAAGTACGTACT
AGTATTTGGTTTACTGCATGCTCTCTAGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30044.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis