Browse Element(s) Details


OsAffx.23045.1.S1_at

Description tigr:9629.m00097
TID=OsAffx.23045.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0191011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23045.1.S1_at--157--2851Chr01:493381..493405 (25 bp)
AAGTACAAGAGCGTGCCCATGCTGA
LOC_Os01g01910
OsAffx.23045.1.S1_at--75--5891Chr01:493389..493413 (25 bp)
GAGCGTGCCCATGCTGACAAAGCCG
LOC_Os01g01910
OsAffx.23045.1.S1_at--201--4491Chr01:493413..493627 (25 bp)
GCCGGCGGCGGTGAATATAACAAAA
LOC_Os01g01910
OsAffx.23045.1.S1_at--497--5231Chr01:493615..493639 (25 bp)
GAATATAACAAAAGGCAGCCGGCAT
LOC_Os01g01910
OsAffx.23045.1.S1_at--72--9051Chr01:493655..493679 (25 bp)
TGCAGGGAGCCGATGCAGAACCCTC
LOC_Os01g01910
OsAffx.23045.1.S1_at--360--71952Chr12:25157034..25157256 (25 bp)
GTCGGTCTCGGTGGCCTTCTGCTTG
NONE
OsAffx.23045.1.S1_at--1029--10571Chr01:493722..493746 (25 bp)
TTCTCGGTCTTCTCGCCGAGGAAGC
LOC_Os01g01910
OsAffx.23045.1.S1_at--106--6191Chr01:493739..493763 (25 bp)
GAGGAAGCCGCTAGTCTGGTCCTTG
LOC_Os01g01910
OsAffx.23045.1.S1_at--1032--4471Chr01:493794..493818 (25 bp)
GCCGTGCCGGAGGTCTTGTCCTTCG
LOC_Os01g01910
OsAffx.23045.1.S1_at--808--8051Chr01:493854..493878 (25 bp)
GGAGAGCCCACCTAAGGCAGCTCAC
LOC_Os01g01910
OsAffx.23045.1.S1_at--821--8952Chr01:494080..494104 (25 bp)
TGAAATGTGGGACCCATGTGGCCCC
LOC_Os01g01910
Target Sequence 
AAGTACAAGAGCGTGCCCATGCTGACAAAGCCGCCGGCGGCGGTGAATATAACAAAAGGCAGCCGGCATGGAAATTGGGA
CAGGTGCAGGGAGCCGATGCAGAACCCTCCACCGCGCCGTCTCGTCGGTCTCGGTGGCCTTCTGCTTGGCCTTCTCGGTC
TTCTCGCCGAGGAAGCCGCTAGTCTGGTCCTTGCTCTCGGCGGCCTTGTCCCTCGCCGCCTACGCCGTGCCGGAGGTCTT
GTCCTTCGCCGCATGTGCCGTCACACCGCCGCCGACTTCCTCCGGAGAGCCCACCTAAGGCAGCTCACTGCGTTCCTCCG
CCGGCGGCGGCGTGGGGGGAGGCCCTCCTGCTCCCGCGTCGTCGCCGCCGCCGCCTCGTCGCCCGTCGCCGACCGCCGGA
GTCCCGTCTCCCGCCTCCCCCACCGGTCTCCTCCCCACACCCGTCGGTTGCCCTGCTCGGTGAGAGAAAGGAAGAGGAGA
GAGGTGGAGAGGGGAGGGGAAGAAGAGGCTGAAATGTGGGACCCATGTGGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis