Browse Element(s) Details


Os.6597.1.S1_at

Description gb:CA762885
DB_XREF= gi:25806924
DB_XREF=BR060002A10F11.ab1
CLONE=BR060002A10F11.ab1
TID=Os.6597.1
CNT=49
FEA=FLmRNA
TIER=Stack
STK=9
UG=Os.6597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative co-repressor protein (P0482C06.28), mRNA
FL= gb:AK121497.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0196011/11Paired amphipathic helix repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6597.1.S1_at--787--5571Chr01:511395..511419 (25 bp)
GAAAGTGCAGCGCTTCCATAGATTT
LOC_Os01g01960
Os.6597.1.S1_at--130--291Chr01:511378..511402 (25 bp)
ATAGATTTCTATCCAAGCCTTAGGG
LOC_Os01g01960
Os.6597.1.S1_at--962--7691Chr01:511256..511379 (25 bp)
GGGTCATCGGCAAAATACTGTCCTT
LOC_Os01g01960
Os.6597.1.S1_at--888--3431Chr01:510951..510975 (25 bp)
CAGTAAGGTCCAGGTTTACCAATAT
LOC_Os01g01960
Os.6597.1.S1_at--951--9491Chr01:510900..510924 (25 bp)
TCTCTCGGTCGTAGGAGGATGGATA
LOC_Os01g01960
Os.6597.1.S1_at--1055--10251Chr01:510848..510872 (25 bp)
TTTGTTGCTGTTGGTATAGGCCCCT
LOC_Os01g01960
Os.6597.1.S1_at--1124--8551Chr01:510837..510861 (25 bp)
TGGTATAGGCCCCTCTGTTTTTTGA
LOC_Os01g01960
Os.6597.1.S1_at--279--10471Chr01:510816..510840 (25 bp)
TTGACCCACCCATGTTTTTGATTGA
LOC_Os01g01960
Os.6597.1.S1_at--1045--5211Chr01:510793..510817 (25 bp)
GAATCTAACGTTGTCAAACACAGCT
LOC_Os01g01960
Os.6597.1.S1_at--597--3311Chr01:510775..510799 (25 bp)
CACAGCTATTGTAATCGATCGATCT
LOC_Os01g01960
Os.6597.1.S1_at--460--9391Chr01:510761..510785 (25 bp)
TCGATCGATCTATCCCTTTGGTAAA
LOC_Os01g01960
Target Sequence 
GAAAGTGCAGCGCTTCCATAGATTTCTATCCAAGCCTTAGGGGTCATCGGCAAAATACTGTCCTTGTTGTAACTAAATCA
GGAGATGCTGCTGCCGAGATCGCGACTGTTTTGCTTCGATATTGAGAGAAGAANCTGTGGGAGATTGATCGATTGACCCC
CTTGGAATAACAAGTGCTTGCTGCTGGGAAGAGGACGATGTTACAGAATACTATATAACAGGGTAAATACAGGAGGAGAG
GAAAGCAAATCAAAGCAAAGCATGAGTGAGCACCGCAGTCAGCTCCGATGTGCTGAAAGAAGTGTTTGTTGTACATATGT
ATTAGCAGAATTAATGTTGTTTGTTCAGTAAGGTCCAGGTTTACCAATATTAATTGTTTACTTACTGCTCTCTCTCTCTC
TCGGTCGTAGGAGGATGGATATTATTCTATTAACTCATCATCAAATCATTTGTTGCTGTTGGTATAGGCCCCTCTGTTTT
TTGACCCACCCATGTTTTTGATTGAATCTAACGTTGTCAAACACAGCTATTGTAATCGATCGATCTATCCCTTTGGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis