Browse Element(s) Details


OsAffx.20956.1.S1_at

Description gb:XM_354179.1
DB_XREF= gi:35189791
TID=OsAffx.20956.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g211101/11hypothetical protein
LOC_Os03g644001/11expressed protein
LOC_Os01g019201/11metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os06g329441/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20956.1.S1_at--690--42334Chr12:25865946..25866030 (25 bp)
CCGAGATGACACAGCGGTACAAGTT
NONE
OsAffx.20956.1.S1_at--1099--10391NONE
TTAGGGACCGTCAAAGTGTACAAGC
NONE
OsAffx.20956.1.S1_at--914--7611NONE
GGGACCGTCAAAGTGTACAAGCCAA
NONE
OsAffx.20956.1.S1_at--960--5711Chr07:7024815..7024835 (21 bp)
GACCGTCAAAGTGTACAAGCCAATT
NONE
OsAffx.20956.1.S1_at--978--7071Chr07:7024811..7024835 (25 bp)
GTCAAAGTGTACAAGCCAATTCCCA
NONE
OsAffx.20956.1.S1_at--1058--3271Chr07:7024809..7024833 (25 bp)
CAAAGTGTACAAGCCAATTCCCAGA
NONE
OsAffx.20956.1.S1_at--226--2871Chr07:7024807..7024831 (25 bp)
AAGTGTACAAGCCAATTCCCAGAAA
NONE
OsAffx.20956.1.S1_at--979--7031Chr07:7024803..7024827 (25 bp)
GTACAAGCCAATTCCCAGAAACATG
NONE
OsAffx.20956.1.S1_at--51--3251Chr07:7024800..7024824 (25 bp)
CAAGCCAATTCCCAGAAACATGAGA
NONE
OsAffx.20956.1.S1_at--510--4391Chr07:7024797..7024821 (25 bp)
GCCAATTCCCAGAAACATGAGAAGT
NONE
OsAffx.20956.1.S1_at--643--91Chr07:7024793..7024817 (25 bp)
ATTCCCAGAAACATGAGAAGTACTA
NONE
Target Sequence 
CCGAGATGACACAGCGGTACAAGTTTAGGGACCGTCAAAGTGTACAAGCCAATTCCCAGAAACATGAGAAGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20956.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis