Browse Element(s) Details


Os.8031.1.S1_at

Description gb:AK111775.1
DB_XREF= gi:37988438
TID=Os.8031.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8031 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1011A07.25 (B1011A07.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075G11, full insert sequence.
FL= gb:AK111775.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2112010/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed
LOC_Os01g21130NANA1+11774954..11775648expressed protein
LOC_Os01g21144Os.31860.1.S2_a_at11/111+11782721..11786296expressed protein
LOC_Os01g21144Os.31860.1.S1_at11/111+11782721..11786296expressed protein
LOC_Os01g21160OsAffx.23317.1.S1_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed
LOC_Os01g21160Os.19003.1.S1_a_at11/111+11786626..117915102-oxo acid dehydrogenases acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8031.1.S1_at--15--8091Chr01:11767076..11767100 (25 bp)
GGAGCTGCTCGCGTACGAGAACTAC
LOC_Os01g21120
Os.8031.1.S1_at--776--6991Chr01:11767088..11767112 (25 bp)
GTACGAGAACTACATGAGCTTCCTC
LOC_Os01g21120
Os.8031.1.S1_at--151--7591Chr01:11767179..11767203 (25 bp)
GGGCTCTGGACCTTCGAAGACTACG
LOC_Os01g21120
Os.8031.1.S1_at--459--1731Chr01:11767188..11767212 (25 bp)
ACCTTCGAAGACTACGAGCTGCCGT
LOC_Os01g21120
Os.8031.1.S1_at--124--4251Chr01:11767209..11767233 (25 bp)
CCGTCGCTAGCGCTCTAGTAAAAAT
LOC_Os01g21120
Os.8031.1.S1_at--449--9951Chr01:11767274..11767298 (25 bp)
TACCCGTAGTAAGTAACCAGTGTCT
LOC_Os01g21120
Os.8031.1.S1_at--340--9971Chr01:11767304..11767328 (25 bp)
TACCGTACTCTATGCGTTATTTTTG
LOC_Os01g21120
Os.8031.1.S1_at--95--8411Chr01:11767370..11767394 (25 bp)
GGCGCCAGTCTCAGTGAAGCTTTTG
LOC_Os01g21120
Os.8031.1.S1_at--555--5391Chr01:11767385..11767409 (25 bp)
GAAGCTTTTGCTGAATCCAAGTTTT
LOC_Os01g21120
Os.8031.1.S1_at--1067--5251Chr01:11767397..11767421 (25 bp)
GAATCCAAGTTTTTCTCTAATGTAA
LOC_Os01g21120
Os.8031.1.S1_at--751--8651NONE
TGTCTTGCCGTCTAACCGTATCGTT
NONE
Target Sequence 
GGAGCTGCTCGCGTACGAGAACTACATGAGCTTCCTCGGCATCCCCTACATGGAGGGCGGCGCCGCCTCCGCCGCCGGCG
CCGAGGAAGCCGCGGCGCCCGCCGGGCTCTGGACCTTCGAAGACTACGAGCTGCCGTCGCTAGCGCTCTAGTAAAAATGT
CACAATAAAAATGACATGTATGTGAAAAAATTTTTCCCTACCCGTAGTAAGTAACCAGTGTCTTTTTTTACCGTACTCTA
TGCGTTATTTTTGTTGAAATTAATCCATTGTTGAAGTTGTAACTGTGCATGGTCGGCGCCAGTCTCAGTGAAGCTTTTGC
TGAATCCAAGTTTTTCTCTAATGTAAATATGAAATTTCCAGTTAANNNANNNNNNAANNNNNANNAAAAAAAAAAAAAAA
AAAAAAAAAACCCCTGTCTTGCCGTCTAACCGTATCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis