Browse Element(s) Details


Os.28032.1.A1_at

Description gb:AK106887.1
DB_XREF= gi:32992096
TID=Os.28032.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-1,3(4)-beta-glucanase (B1011A07.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-F12, full insert sequence.
FL= gb:AK106887.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2107011/11Endoglucanase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21120Os.8031.1.S1_at10/111+11766391..11767460AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007389biological_processpattern specification
GO:0042547biological_processcell wall modification during multidimensional cell growth
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28032.1.A1_at--470--911Chr01:11741726..11741750 (25 bp)
AGGCTCTACTACCTTCTTTGGGAGA
LOC_Os01g21070
Os.28032.1.A1_at--480--2271Chr01:11741762..11741786 (25 bp)
AAATCGTCCCAGATAATAGCATCAC
LOC_Os01g21070
Os.28032.1.A1_at--883--291Chr01:11741777..11741801 (25 bp)
ATAGCATCACTATTTCGACGTCGTC
LOC_Os01g21070
Os.28032.1.A1_at--710--10611Chr01:11741790..11741814 (25 bp)
TTCGACGTCGTCTTAATCTAATTAG
LOC_Os01g21070
Os.28032.1.A1_at--344--7631Chr01:11741865..11741889 (25 bp)
GGGACCCCAGTGCAAGCAAAACAAG
LOC_Os01g21070
Os.28032.1.A1_at--1146--5871Chr01:11741889..11741913 (25 bp)
GAGCACTAGTGGGTCTAAGTATTCA
LOC_Os01g21070
Os.28032.1.A1_at--128--4011Chr01:11741922..11741946 (25 bp)
CGTAATTAACGTGCTCGCTGGTGTT
LOC_Os01g21070
Os.28032.1.A1_at--961--4711Chr01:11741938..11741962 (25 bp)
GCTGGTGTTAAACCCTGTGTTCGTA
LOC_Os01g21070
Os.28032.1.A1_at--1012--9811Chr01:11741961..11741985 (25 bp)
TAAAGCGGTCGACGGATGTTCGTCC
LOC_Os01g21070
Os.28032.1.A1_at--6--331Chr01:11741976..11742000 (25 bp)
ATGTTCGTCCGGAAAATGTACCCAG
LOC_Os01g21070
Os.28032.1.A1_at--555--2291Chr01:11741989..11742013 (25 bp)
AAATGTACCCAGTTGCAACTCGCAA
LOC_Os01g21070
Target Sequence 
AGGCTCTACTACCTTCTTTGGGAGATTTGATCAAACAAATCGTCCCAGATAATAGCATCACTATTTCGACGTCGTCTTAA
TCTAATTAGTCGGTGGATTTGGGGGCAGGTTAAATTTAGTGGGTAGTAATTGTGATTTGGGGACCCCAGTGCAAGCAAAA
CAAGAGCACTAGTGGGTCTAAGTATTCATTAGGGTACGTAATTAACGTGCTCGCTGGTGTTAAACCCTGTGTTCGTAAAG
CGGTCGACGGATGTTCGTCCGGAAAATGTACCCAGTTGCAACTCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28032.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis