Browse Element(s) Details


OsAffx.23315.2.S1_at

Description tigr:9629.m02007
TID=OsAffx.23315.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2105011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23315.2.S1_at--536--3911Chr01:11735326..11735350 (25 bp)
CTGGACGGGTGCATCTGGAAGCTTA
LOC_Os01g21050
OsAffx.23315.2.S1_at--721--5751Chr01:11735323..11735347 (25 bp)
GACGGGTGCATCTGGAAGCTTATTT
LOC_Os01g21050
OsAffx.23315.2.S1_at--848--1911Chr01:11735322..11735346 (25 bp)
ACGGGTGCATCTGGAAGCTTATTTG
LOC_Os01g21050
OsAffx.23315.2.S1_at--483--7711Chr01:11735320..11735344 (25 bp)
GGGTGCATCTGGAAGCTTATTTGAT
LOC_Os01g21050
OsAffx.23315.2.S1_at--109--9471Chr01:11735313..11735337 (25 bp)
TCTGGAAGCTTATTTGATGATTAAA
LOC_Os01g21050
OsAffx.23315.2.S1_at--366--4311Chr01:11735282..11735306 (25 bp)
CCTTCAACAGCAAACTCTCTCTGGA
LOC_Os01g21050
OsAffx.23315.2.S1_at--514--9711Chr01:11735279..11735303 (25 bp)
TCAACAGCAAACTCTCTCTGGAAGA
LOC_Os01g21050
OsAffx.23315.2.S1_at--2--2491Chr01:11735277..11735301 (25 bp)
AACAGCAAACTCTCTCTGGAAGATG
LOC_Os01g21050
OsAffx.23315.2.S1_at--499--3411Chr01:11735275..11735299 (25 bp)
CAGCAAACTCTCTCTGGAAGATGTT
LOC_Os01g21050
OsAffx.23315.2.S1_at--1062--5131Chr01:11735273..11735297 (25 bp)
GCAAACTCTCTCTGGAAGATGTTGG
LOC_Os01g21050
OsAffx.23315.2.S1_at--658--2391Chr01:11735271..11735295 (25 bp)
AAACTCTCTCTGGAAGATGTTGGCA
LOC_Os01g21050
Target Sequence 
CTGGACGGGTGCATCTGGAAGCTTATTTGATGATTAAAGAAAACCCTTCAACAGCAAACTCTCTCTGGAAGATGTTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23315.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis