Browse Element(s) Details


OsAffx.23314.1.S1_at

Description tigr:9629.m02003
TID=OsAffx.23314.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2101011/11hypothetical protein
LOC_Os02g325602/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23314.1.S1_at--632--6432Chr01:11710794..11710818 (25 bp)
GATCATTTATCTCCAATCCTCTTTA
LOC_Os01g21010
OsAffx.23314.1.S1_at--542--472Chr01:11710802..11710826 (25 bp)
ATCTCCAATCCTCTTTAATATAGTG
LOC_Os01g21010
OsAffx.23314.1.S1_at--1081--231Chr01:11710819..11710843 (25 bp)
ATATAGTGGCGGACATGCTCGCTTT
LOC_Os01g21010
OsAffx.23314.1.S1_at--649--8131Chr01:11710829..11710853 (25 bp)
GGACATGCTCGCTTTACTAATTAAG
LOC_Os01g21010
OsAffx.23314.1.S1_at--27--8311Chr01:11710856..11711127 (25 bp)
GGCTAAGGAGGGTCTTTTCCTGTCA
LOC_Os01g21010
OsAffx.23314.1.S1_at--1068--10291Chr01:11711118..11711142 (25 bp)
TTTCCTGTCAAGTACCTTGGCATTC
LOC_Os01g21010
OsAffx.23314.1.S1_at--1137--6971Chr01:11711129..11711153 (25 bp)
GTACCTTGGCATTCCAATGCATTTT
LOC_Os01g21010
OsAffx.23314.1.S1_at--551--10452Chr01:14184315..14184339 (25 bp)
TTACTACAGATCACGTTTCTTTTGG
NONE
OsAffx.23314.1.S1_at--660--2831Chr01:11711385..11711409 (25 bp)
AAGTATAGACTCACCAGATGGGATA
LOC_Os01g21010
OsAffx.23314.1.S1_at--796--2311Chr01:11712440..11712464 (25 bp)
AAAGGTTGCATGTCAGAAGCTTGAG
LOC_Os01g21010
OsAffx.23314.1.S1_at--1037--2673Chr01:11712456..11712480 (25 bp)
AAGCTTGAGACGATGGTTATGCAAC
LOC_Os01g21010
Target Sequence 
GATCATTTATCTCCAATCCTCTTTAATATAGTGGCGGACATGCTCGCTTTACTAATTAAGAGGGCTAAGGAGGGTCTTTT
CCTGTCAAGTACCTTGGCATTCCAATGCATTTTAGAAAACTTAGTAACAAAGATTGGAAAGTTATTAAACAAAGAATTGA
GAAAAAACTTAGTAGTTGGAAAGATACCGAAAGGGGTTCTTCAAAAGATTGATTACTACAGATCACGTTTCTTTTGGCAA
GGAGATGATCACAAGAAAAAGTATAGACTCACCAGATGGGATATAATTTGTCAACCCAAAGATCAGGGTGGTCTGGGGTC
CATAATTTGGAGGAATAATGTGGTTTTTGACAAATCATCATCTATTACATATATGCAGGTAATTTTCAGGGCAACATACT
GGCTCCGGCTCTGGGCTCAACTACAAAGGTCTAATGAAAATGGTGAGTTCATAAAGGTTGCATGTCAGAAGCTTGAGACG
ATGGTTATGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis