Browse Element(s) Details


Os.32222.1.S1_at

Description gb:AK105552.1
DB_XREF= gi:32990761
TID=Os.32222.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32222 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative steroid sulfotransferase (P0551A11.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full insert sequence.
FL= gb:AK105552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2095011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32222.1.S1_at--358--2951Chr01:11686219..11686243 (25 bp)
AAGGCGTGCAGCTTCGAGAGCCTAG
LOC_Os01g20950
Os.32222.1.S1_at--582--2491Chr01:11686180..11686204 (25 bp)
AACAGGTCAGGGACGATTGAGCTGA
LOC_Os01g20950
Os.32222.1.S1_at--845--5871Chr01:11686150..11686174 (25 bp)
GAGCCGATGCGGAACGCCGAGTTCT
LOC_Os01g20950
Os.32222.1.S1_at--114--2611Chr01:11686138..11686162 (25 bp)
AACGCCGAGTTCTTCCGGCGAGGCG
LOC_Os01g20950
Os.32222.1.S1_at--889--5771Chr01:11686063..11686087 (25 bp)
GACGAGATTACCGAGAGCAAGTTCA
LOC_Os01g20950
Os.32222.1.S1_at--626--911Chr01:11686037..11686061 (25 bp)
AGGCTCTGGACTGGTGTTGCCCACG
LOC_Os01g20950
Os.32222.1.S1_at--176--10711Chr01:11686021..11686045 (25 bp)
TTGCCCACGATGATGACCATGTAAT
LOC_Os01g20950
Os.32222.1.S1_at--1030--3111Chr01:11685978..11686002 (25 bp)
AATATTGTTACAACCACTGGTGGAG
LOC_Os01g20950
Os.32222.1.S1_at--1072--3952Chr04:29534027..29534142 (25 bp)
CGGTTAGCAACACCAATCGGGACTA
NONE
Os.32222.1.S1_at--156--6671Chr01:11685771..11685795 (25 bp)
GTTGCGGTAGTGAGATGATCCCCTT
LOC_Os01g20950
Os.32222.1.S1_at--236--100711Chr10:15988463..15988486 (24 bp)
TAGTGAGATGATCCCCTTTTTCTTT
NONE
Target Sequence 
AAGGCGTGCAGCTTCGAGAGCCTAGCGGGCGCGGAGGTGAACAGGTCAGGGACGATTGAGCTGATGGAGGAGCCGATGCG
GAACGCCGAGTTCTTCCGGCGAGGCGTCGTCGGGGGNTGGCCGAACTACCTGTCGCCGGAGATGGCCACAAGGATCGACG
AGATTACCGAGAGCAAGTTCAGAGGCTCTGGACTGGTGTTGCCCACGATGATGACCATGTAATAAGTACAGTACATTTTG
CAATATTGTTACAACCACTGGTGGAGAAATATTTTTAGTCACGGTTCGCAACCCCCTGTAGTCCCGGTTAACCAGGACTA
CCAATCCGGGACTAAAAATCGCTATCTTTATTCCCGGTTCAAATACCCGGAACTAAAAATAGATCTTTAGTCCCGGTTAG
CAACACCAATCGGGACTAAAGAGAGGGGCCAACGGGACTAAAGAGAGGGTTGCGGTAGTGAGATGATCCCCTTTTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis