Browse Element(s) Details


Os.13500.2.S1_x_at

Description gb:NM_183696.1
DB_XREF= gi:34894519
GEN=P0551A11.24
TID=Os.13500.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.13500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0551A11.24 (P0551A11.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0551A11.24 (P0551A11.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2094011/11dual specificity protein phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008138molecular_functionprotein tyrosine/serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13500.2.S1_x_at--1151--6571Chr01:11681335..11681359 (25 bp)
GATTCCCAATTTCCCGATCTTTTTG
LOC_Os01g20940
Os.13500.2.S1_x_at--667--8031Chr01:11681583..11681607 (25 bp)
GGAGTGCCACAATTGTGCTTGCCTA
LOC_Os01g20940
Os.13500.2.S1_x_at--522--9071Chr01:11681598..11681622 (25 bp)
TGCTTGCCTACCTGATGCTCAGAAA
LOC_Os01g20940
Os.13500.2.S1_x_at--230--1411Chr01:11681618..11681745 (25 bp)
AGAAAGGGCCTCACTCTTGCGAAAG
LOC_Os01g20940
Os.13500.2.S1_x_at--16--5251Chr01:11681786..11681810 (25 bp)
GAATGACGGTTTCGCAAAGGCTCTG
LOC_Os01g20940
Os.13500.2.S1_x_at--973--2291Chr01:11681801..11681825 (25 bp)
AAAGGCTCTGCTAGCGCTTGACAGG
LOC_Os01g20940
Os.13500.2.S1_x_at--592--10091Chr01:11681846..11681870 (25 bp)
TATGGATTGGCAGCACAAGCGACCT
LOC_Os01g20940
Os.13500.2.S1_x_at--658--5911Chr01:11681918..11681942 (25 bp)
GAGCTCACTCAAACTGCATCTGCAG
LOC_Os01g20940
Os.13500.2.S1_x_at--806--9691Chr01:11681948..11681972 (25 bp)
TCACAAGCGGCTATCTGCAGGTAGT
LOC_Os01g20940
Os.13500.2.S1_x_at--902--7851Chr01:11681967..11681991 (25 bp)
GGTAGTGTGGACAGCGCCATGACCT
LOC_Os01g20940
Os.13500.2.S1_x_at--330--6571Chr01:11681996..11682020 (25 bp)
GATTCAGAAGTCGATCCAGTCGCTC
LOC_Os01g20940
Target Sequence 
GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTT
TGAAGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTC
GGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAA
GTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTC
TATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCAC
TCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAG
TCGATCCAGTCGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13500.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis