Browse Element(s) Details


Os.8072.1.S1_at

Description gb:AK072493.1
DB_XREF= gi:32982516
TID=Os.8072.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8072 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1011A07.9 (B1011A07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132A06, full insert sequence.
FL= gb:AK072493.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2097011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8072.1.S1_at--190--4471Chr01:11696534..11696558 (25 bp)
GCCTCGAGGACTGCTCCGAGAGGTA
LOC_Os01g20970
Os.8072.1.S1_at--360--2691Chr01:11696888..11696912 (25 bp)
AAGCTGATCCGCGTGTCACCGAGCG
LOC_Os01g20970
Os.8072.1.S1_at--65--4671Chr01:11696898..11696922 (25 bp)
GCGTGTCACCGAGCGCTGAAGAATA
LOC_Os01g20970
Os.8072.1.S1_at--55--5891Chr01:11696908..11696932 (25 bp)
GAGCGCTGAAGAATAGCTTTCTCTT
LOC_Os01g20970
Os.8072.1.S1_at--29--10431Chr01:11696940..11696964 (25 bp)
TTATCCCCTGGATATTCTTTTTTAT
LOC_Os01g20970
Os.8072.1.S1_at--856--9751Chr01:11696982..11697006 (25 bp)
TAATCTGGGATTCCATGGTTGGAAG
LOC_Os01g20970
Os.8072.1.S1_at--142--5351Chr01:11697003..11697027 (25 bp)
GAAGATTAGCATGTTTGTTGATGGC
LOC_Os01g20970
Os.8072.1.S1_at--794--6651Chr01:11697019..11697043 (25 bp)
GTTGATGGCTTTGAATTGGATTGGT
LOC_Os01g20970
Os.8072.1.S1_at--444--6611Chr01:11697037..11697061 (25 bp)
GATTGGTAATTGCTGTTTGCATCAG
LOC_Os01g20970
Os.8072.1.S1_at--37--411Chr01:11697057..11697081 (25 bp)
ATCAGCAGACAACATCCTAGGCGCT
LOC_Os01g20970
Os.8072.1.S1_at--1144--2551Chr01:11697093..11697117 (25 bp)
AACTGTTGTTGGGTTCATACGATCA
LOC_Os01g20970
Target Sequence 
GCCTCGAGGACTGCTCCGAGAGGTACGAGGCGGCGGTGGAGCAGCTGACGGACGCGACGGTGGCGCTGGACACGGGGGGG
TACGAGGAGGCGATGGCGCTGGTGGCGGCGGGGCAGGCGGAGGTGAAGATGTGCCAGAGGGGGTTCAAGGCCGTGCCGCA
GCACCGGAACATCCTCACCTTGCGCAACCGCGAGGTCGACCAGCTCTGCAGCATCGCCTTCACCATCACCAAGCTGATCC
GCGTGTCACCGAGCGCTGAAGAATAGCTTTCTCTTCTTCCTTTTATCCCCTGGATATTCTTTTTTATTTTTTCGACGACA
GGGNTAATCTGGGATTCCATGGTTGGAAGATTAGCATGTTTGTTGATGGCTTTGAATTGGATTGGTAATTGCTGTTTGCA
TCAGCAGACAACATCCTAGGCGCTGNCGNTGNTGGAACTGTTGTTGGGTTCATACGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8072.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis