Browse Element(s) Details


OsAffx.11135.1.S1_at

Description tigr:9629.m01998
TID=OsAffx.11135.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2096010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed
LOC_Os01g20960OsAffx.11135.1.S1_at10/111+11693383..11693664hypothetical protein
LOC_Os01g20970Os.8072.1.S1_at11/111+11696092..11697165pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g20980Os.37598.1.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20980Os.37598.2.S1_at11/111+11697749..11700265Pectinesterase family protein, expressed
LOC_Os01g20990NANA1+11702869..11706214retrotransposon protein, putative, unclassified
LOC_Os01g21000NANA1+11706828..11707929hypothetical protein
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11135.1.S1_at--407--8831Chr01:11693417..11693441 (25 bp)
TGATATATGGTCAATTCAAATTGCT
LOC_Os01g20960
OsAffx.11135.1.S1_at--758--4831NONE
GCTAAACTCAGTCCCAAGACAGATA
NONE
OsAffx.11135.1.S1_at--149--7251Chr01:11693449..11693551 (25 bp)
GTCCCAAGACAGATAAGCTACACTA
LOC_Os01g20960
OsAffx.11135.1.S1_at--914--6451Chr01:11693538..11693562 (25 bp)
GATAAGCTACACTAGCCTCATGCAG
LOC_Os01g20960
OsAffx.11135.1.S1_at--573--9791Chr01:11693540..11693564 (25 bp)
TAAGCTACACTAGCCTCATGCAGCA
LOC_Os01g20960
OsAffx.11135.1.S1_at--67--371Chr01:11693566..11693590 (25 bp)
ATAATTCATAGTCCACGTGTTACCT
LOC_Os01g20960
OsAffx.11135.1.S1_at--8--291Chr01:11693573..11693597 (25 bp)
ATAGTCCACGTGTTACCTATCAACC
LOC_Os01g20960
OsAffx.11135.1.S1_at--1120--9211Chr01:11693577..11693601 (25 bp)
TCCACGTGTTACCTATCAACCGAAT
LOC_Os01g20960
OsAffx.11135.1.S1_at--206--1711Chr01:11693580..11693604 (25 bp)
ACGTGTTACCTATCAACCGAATACA
LOC_Os01g20960
OsAffx.11135.1.S1_at--930--9971Chr01:11693586..11693610 (25 bp)
TACCTATCAACCGAATACAACAAGT
LOC_Os01g20960
OsAffx.11135.1.S1_at--162--10171Chr01:11693610..11693634 (25 bp)
TATACTAACTTACATAATATACCTG
LOC_Os01g20960
Target Sequence 
TGATATATGGTCAATTCAAATTGCTAAACTCAGTCCCAAGACAGATAAGCTACACTAGCCTCATGCAGCAAATAATTCAT
AGTCCACGTGTTACCTATCAACCGAATACAACAAGTATACTAACTTACATAATATACCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11135.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis