Browse Element(s) Details


Os.36147.1.S1_at

Description gb:AK064374.1
DB_XREF= gi:32974392
TID=Os.36147.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase-like (P0551A11.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-D05, full insert sequence.
FL= gb:AK064374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2090010/11Protein kinase domain containing protein, expressed
LOC_Os07g422801/11von Willebrand factor type A domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20940Os.13500.2.S1_x_at11/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20940Os.13500.1.S1_at10/111+11676292..11682491dual specificity protein phosphatase family protein, putative, expressed
LOC_Os01g20950Os.32222.1.S1_at11/111+11685728..11687134Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36147.1.S1_at--226--3651Chr01:11663679..11663703 (25 bp)
CTTCGTTGGTTCTTGCTAGGTGCAG
LOC_Os01g20900
Os.36147.1.S1_at--142--6891Chr01:11663783..11663807 (25 bp)
GTATTTGATCATACACTTCCGCGTG
LOC_Os01g20900
Os.36147.1.S1_at--1138--4751NONE
GCTGCTGCCAGGGTAATAATATTCC
NONE
Os.36147.1.S1_at--73--10191Chr01:11664007..11664031 (25 bp)
TATTCCTAAGCCTGGATGTTACTGT
LOC_Os01g20900
Os.36147.1.S1_at--808--7992Chr07:25299634..25299721 (25 bp)
GGATGTTACTGTCTGTGTTTCACAA
LOC_Os07g42280
Os.36147.1.S1_at--1134--6031Chr01:11664091..11664115 (25 bp)
GAGATCATGTTTTGCCTACATTGAA
LOC_Os01g20900
Os.36147.1.S1_at--869--7692Chr01:11664146..11664170 (25 bp)
GGGTCAAACAATCTGTTTCTGTTCT
LOC_Os01g20900
Os.36147.1.S1_at--257--7831Chr01:11664215..11664239 (25 bp)
GGTTAGCTCCCATGTAAAGTTAGAT
LOC_Os01g20900
Os.36147.1.S1_at--477--6611Chr01:11664263..11664287 (25 bp)
GTTGAGGGCCTTGTTAATCCACATA
LOC_Os01g20900
Os.36147.1.S1_at--179--351Chr01:11664285..11664309 (25 bp)
ATAAAACCCTCAGCAGTCTATCACA
LOC_Os01g20900
Os.36147.1.S1_at--633--7151Chr01:11664300..11664324 (25 bp)
GTCTATCACACGAACAAGTCCCATT
LOC_Os01g20900
Target Sequence 
CTTCGTTGGTTCTTGCTAGGTGCAGGTTGAGAGGACAGTATAGTGTAAAGAGCGATGTCTACGCCTTTGGGGTTGTATTG
TTGGAGCTTTTAACTGGTCGCAAAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCTTGTAAAATGGGCTACACC
AAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGCTGCCAGGG
TAATAATATTCCTAAGCCTGGATGTTACTGTCTGTGTTTCACAATTTTTTTTACATCATAATTGCATAAGAATTTCGGGA
AGTTTCATTTGAGATCATGTTTTGCCTACATTGAATCTGAACTTCGTCAGCATAAATTATCTGTAGGGTCAAACAATCTG
TTTCTGTTCTTCACTTTGAAAAAACAGATGGTTTCTTTTGCACATGTAACTCATGGTTAGCTCCCATGTAAAGTTAGATA
TGAGGATAGGAAGCGCAGGTTAGTTGAGGGCCTTGTTAATCCACATAAAACCCTCAGCAGTCTATCACACGAACAAGTCC
CATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis