Browse Element(s) Details


Os.45752.1.S1_at

Description gb:CF307216
DB_XREF= gi:33678977
DB_XREF=HDA1--06-B08.g1
CLONE=HDA1--06-B08
TID=Os.45752.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45752 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) protein kinase-like (OJ1116_C07.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2088011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45752.1.S1_at--330--1031Chr01:11640279..11640303 (25 bp)
AGGTAAGTGTTTTATTCACGAGGCA
LOC_Os01g20880
Os.45752.1.S1_at--693--6811Chr01:11640287..11640311 (25 bp)
GTTTTATTCACGAGGCAATTGCTAT
LOC_Os01g20880
Os.45752.1.S1_at--58--131Chr01:11640292..11640316 (25 bp)
ATTCACGAGGCAATTGCTATTGGAG
LOC_Os01g20880
Os.45752.1.S1_at--214--31Chr01:11640310..11640334 (25 bp)
ATTGGAGTTGAGTGCTTACAACTGA
LOC_Os01g20880
Os.45752.1.S1_at--415--10491Chr01:11640325..11640349 (25 bp)
TTACAACTGATGTCCAGACGCGGCC
LOC_Os01g20880
Os.45752.1.S1_at--636--3731Chr01:11640331..11640355 (25 bp)
CTGATGTCCAGACGCGGCCAAAAAT
LOC_Os01g20880
Os.45752.1.S1_at--198--5811Chr01:11640341..11640365 (25 bp)
GACGCGGCCAAAAATGAGTGATGTT
LOC_Os01g20880
Os.45752.1.S1_at--654--7391Chr01:11640358..11640382 (25 bp)
GTGATGTTCTTTCACGTCTTCGGAC
LOC_Os01g20880
Os.45752.1.S1_at--1119--1891Chr01:11640371..11640395 (25 bp)
ACGTCTTCGGACCATCTCTGCAGCT
LOC_Os01g20880
Os.45752.1.S1_at--193--5391Chr01:11640406..11640430 (25 bp)
GAAGCAAACTCATCATGGCTACACA
LOC_Os01g20880
Os.45752.1.S1_at--27--2551Chr01:11640412..11640436 (25 bp)
AACTCATCATGGCTACACAAACAAA
LOC_Os01g20880
Target Sequence 
AGGTAAGTGTTTTATTCACGAGGCAATTGCTATTGGAGTTGAGTGCTTACAACTGATGTCCAGACGCGGCCAAAAATGAG
TGATGTTCTTTCACGTCTTCGGACCATCTCTGCAGCTCAGAGTATTAGAAGCAAACTCATCATGGCTACACAAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45752.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis