Browse Element(s) Details


OsAffx.2046.1.S1_at

Description gb:NM_183686.1
DB_XREF= gi:34894499
GEN=OJ1116_C07.13
TID=OsAffx.2046.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OJ1116_C07.13 (OJ1116_C07.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g208707/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2046.1.S1_at--545--1351Chr01:11630000..11630024 (25 bp)
AGAGATCTGGCAACAAGGAGCACAT
NONE
OsAffx.2046.1.S1_at--1--291Chr01:11630027..11630088 (25 bp)
ATAGAGTAGCGCTGCTTGATCCACG
NONE
OsAffx.2046.1.S1_at--258--1831Chr01:11630086..11630110 (25 bp)
ACGCCCTTTGGAGGCTGGCTCAATG
NONE
OsAffx.2046.1.S1_at--1068--691Chr01:11630108..11630132 (25 bp)
ATGAGGACTGAGACTGACTGTGGCA
NONE
OsAffx.2046.1.S1_at--66--8011Chr01:11630133..11630157 (25 bp)
GGAGGTGCACATCCAAGCATTGGAA
LOC_Os01g20870
OsAffx.2046.1.S1_at--647--4931Chr01:11630149..11630173 (25 bp)
GCATTGGAACCATCACGGTAGCGTA
LOC_Os01g20870
OsAffx.2046.1.S1_at--1120--3531Chr01:11630159..11630183 (25 bp)
CATCACGGTAGCGTATGGCGGCTTG
LOC_Os01g20870
OsAffx.2046.1.S1_at--514--2971Chr01:11630263..11630287 (25 bp)
AATGGATGACCCCATCATTGTCAAC
LOC_Os01g20870
OsAffx.2046.1.S1_at--488--10791Chr01:11630280..11630304 (25 bp)
TTGTCAACCATTATCGCGCTTGCAA
LOC_Os01g20870
OsAffx.2046.1.S1_at--888--10731Chr01:11630299..11630323 (25 bp)
TTGCAATAGCTACCGCTTTCACCGA
LOC_Os01g20870
OsAffx.2046.1.S1_at--936--1731Chr01:11630385..11630409 (25 bp)
ACCTTCCCGTGGACGAGCTAGAGAG
LOC_Os01g20870
Target Sequence 
AGAGATCTGGCAACAAGGAGCACATGGATAGAGTAGCGCTGCTTGATCCACGCCCTTTGGAGGCTGGCTCAATGAGGACT
GAGACTGACTGTGGCAGGAGGTGCACATCCAAGCATTGGAACCATCACGGTAGCGTATGGCGGCTTGGTAGAGCTCGTCG
TCACCGGGATGGGAAGGGGGAAATGGAGGTCGGGGATGGGAGTGAAGGGGGAGGGGACAAGAGGAGAATGGATGACCCCA
TCATTGTCAACCATTATCGCGCTTGCAATAGCTACCGCTTTCACCGACAGCCATCGAGCTCATCTACCGACCGCCTCCGC
CGTTGCTGCCCCATCCTCGCCGACCGCCACCTTCCCGTGGACGAGCTAGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis