Browse Element(s) Details


OsAffx.2045.2.S1_at

Description tigr:9629.m01985
TID=OsAffx.2045.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2085011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2045.2.S1_at--1009--4251Chr01:11606990..11607014 (25 bp)
CCTCCTGCGGCCTCCGGATCCAGTT
LOC_Os01g20850
OsAffx.2045.2.S1_at--27--9631Chr01:11606781..11606805 (25 bp)
TCATGGCCGTCTTCGAAGACGCGAA
LOC_Os01g20850
OsAffx.2045.2.S1_at--881--3491Chr01:11606780..11606804 (25 bp)
CATGGCCGTCTTCGAAGACGCGAAC
LOC_Os01g20850
OsAffx.2045.2.S1_at--947--871Chr01:11606779..11606803 (25 bp)
ATGGCCGTCTTCGAAGACGCGAACT
LOC_Os01g20850
OsAffx.2045.2.S1_at--676--8451Chr01:11606778..11606802 (25 bp)
TGGCCGTCTTCGAAGACGCGAACTC
LOC_Os01g20850
OsAffx.2045.2.S1_at--611--4011Chr01:11606774..11606798 (25 bp)
CGTCTTCGAAGACGCGAACTCTCTG
LOC_Os01g20850
OsAffx.2045.2.S1_at--199--3651Chr01:11606771..11606795 (25 bp)
CTTCGAAGACGCGAACTCTCTGCAT
LOC_Os01g20850
OsAffx.2045.2.S1_at--796--10591Chr01:11606770..11606794 (25 bp)
TTCGAAGACGCGAACTCTCTGCATT
LOC_Os01g20850
OsAffx.2045.2.S1_at--1160--9351Chr01:11606769..11606793 (25 bp)
TCGAAGACGCGAACTCTCTGCATTT
LOC_Os01g20850
OsAffx.2045.2.S1_at--815--4111Chr01:11606768..11606792 (25 bp)
CGAAGACGCGAACTCTCTGCATTTT
LOC_Os01g20850
OsAffx.2045.2.S1_at--339--5371Chr01:11606767..11606791 (25 bp)
GAAGACGCGAACTCTCTGCATTTTG
LOC_Os01g20850
Target Sequence 
CCTCCTGCGGCCTCCGGATCCAGTTCAAGCTCTACGCCCTCGACGACGAGGACAAGCTGATGGACGCCATCGAGGGGCAT
GTGCTGGGAGAAGCCGAGCTCATGGCCGTCTTCGAAGACGCGAACTCTCTGCATTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2045.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis