Browse Element(s) Details


Os.16542.1.S1_s_at

Description gb:AK100627.1
DB_XREF= gi:32985836
TID=Os.16542.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1116_C07.9 (OJ1116_C07.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108O19, full insert sequence.
FL= gb:AK100627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2084011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16542.1.S1_s_at--978--8211Chr01:11604633..11604657 (25 bp)
GGAATATACGAGACCCCAAGGGATC
LOC_Os01g20840
Os.16542.1.S1_s_at--767--10151Chr01:11604637..11604661 (25 bp)
TATACGAGACCCCAAGGGATCTTTA
LOC_Os01g20840
Os.16542.1.S1_s_at--459--9871Chr01:11604639..11604663 (25 bp)
TACGAGACCCCAAGGGATCTTTACA
LOC_Os01g20840
Os.16542.1.S1_s_at--936--7651Chr01:11604652..11604676 (25 bp)
GGGATCTTTACAGTAAAATCCGTCT
LOC_Os01g20840
Os.16542.1.S1_s_at--429--6271Chr01:11604654..11604678 (25 bp)
GATCTTTACAGTAAAATCCGTCTAT
LOC_Os01g20840
Os.16542.1.S1_s_at--1109--711Chr01:11604687..11604711 (25 bp)
ATGATCAATGACCATTACATGCCGA
LOC_Os01g20840
Os.16542.1.S1_s_at--998--6451Chr01:11604689..11604713 (25 bp)
GATCAATGACCATTACATGCCGATG
LOC_Os01g20840
Os.16542.1.S1_s_at--395--371Chr01:11604690..11604714 (25 bp)
ATCAATGACCATTACATGCCGATGT
LOC_Os01g20840
Os.16542.1.S1_s_at--122--3191Chr01:11604692..11604716 (25 bp)
CAATGACCATTACATGCCGATGTAT
LOC_Os01g20840
Os.16542.1.S1_s_at--133--8931Chr01:11604695..11604719 (25 bp)
TGACCATTACATGCCGATGTATAAG
LOC_Os01g20840
Os.16542.1.S1_s_at--326--4331Chr01:11604698..11604722 (25 bp)
CCATTACATGCCGATGTATAAGAAA
LOC_Os01g20840
Target Sequence 
GGAATATACGAGACCCCAAGGGATCTTTACAGTAAAATCCGTCTATCCAACACCATGATCAATGACCATTACATGCCGAT
GTATAAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16542.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis