Browse Element(s) Details


Os.46758.1.S1_s_at

Description gb:AK120868.1
DB_XREF= gi:37990491
TID=Os.46758.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46758 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025P20, full insert sequence.
FL= gb:AK120868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g208604/11Phospholipase D. Active site motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0012501biological_processprogrammed cell death
GO:0005886cellular_componentplasma membrane
GO:0015630cellular_componentmicrotubule cytoskeleton
GO:0004630molecular_functionphospholipase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46758.1.S1_s_at--431--2271Chr01:11608326..11608350 (25 bp)
AAATCGGCCACACAACCATTGACCT
LOC_Os01g20860
Os.46758.1.S1_s_at--848--8471Chr01:11608257..11608281 (25 bp)
TGGCAGGCACCGATCCTATGGAAAA
LOC_Os01g20860
Os.46758.1.S1_s_at--84--9391Chr01:11608209..11608233 (25 bp)
TCGTTTCCTTCCCTTTGGAGTTCAT
LOC_Os01g20860
Os.46758.1.S1_s_at--576--4071Chr01:11608148..11608172 (25 bp)
CGAATATTATACGTCCCCGCAAGTT
LOC_Os01g20860
Os.46758.1.S1_s_at--656--1191Chr01:11608127..11608151 (25 bp)
AGTTTTCCATTAGCTTCTCCCAAAT
NONE
Os.46758.1.S1_s_at--126--6971Chr01:11608084..11608108 (25 bp)
GTAGCATTAGCTTCTTGTTTGGTAT
NONE
Os.46758.1.S1_s_at--84--6871Chr01:11608068..11608092 (25 bp)
GTTTGGTATAGTTTTCCCATAGGAT
NONE
Os.46758.1.S1_s_at--507--3051Chr01:11607938..11607962 (25 bp)
AATCGGGCAGTGTTAGTTCGCCCAT
NONE
Os.46758.1.S1_s_at--191--6751Chr01:11607927..11607951 (25 bp)
GTTAGTTCGCCCATCACAAAGGGAA
NONE
Os.46758.1.S1_s_at--687--2851Chr01:11607878..11607902 (25 bp)
AATGTTGCCGTTCACTTTATTCTTT
NONE
Os.46758.1.S1_s_at--484--10211Chr01:11607861..11607885 (25 bp)
TATTCTTTCGCACTGCACTTGCAAA
NONE
Target Sequence 
AAATCGGCCACACAACCATTGACCTGGGNTGTTGCTGTAGAGATAACNGNAAACTCNCAAGGATGGGGATCTGGCAGGCA
CCGATCCTATGGAAAAATTACAGGCCGTTAGGGGCCATCTCGTTTCCTTCCCTTTGGAGTTCATGTGCCAAGAGGACTTG
AGACCATTNTTCGGCGAAAGCGAATATTATACGTCCCCGCAAGTTTTCCATTAGCTTCTCCCAAATTTTTTTAACTACAT
TTTAGTAGCATTAGCTTCTTGTTTGGTATAGTTTTCCCATAGGATCTTTTTTTAGGCTGTACATGTTACATACAGGGTTT
TTACAATTGTATAGATGTATATATGTCTTGTGGAAATAGTTAAAACTTAAGAGAAGAAAAGCAAAGAGAGAATCGGGCAG
TGTTAGTTCGCCCATCACAAAGGGAATAAAAAATAATTTNTTAGGCAAGGAATGTTGCCGTTCACTTTATTCTTTCGCAC
TGCACTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46758.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis