Browse Element(s) Details


Os.38381.1.S1_at

Description gb:AK110758.1
DB_XREF= gi:32995967
TID=Os.38381.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.38381 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1116_C07.8 (OJ1116_C07.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-H03, full insert sequence.
FL= gb:AK110758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2083011/11heavy metal-associated domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20780Os.40421.1.S1_at9/111+11568088..11568986expressed protein
LOC_Os01g20800NANA1+11573707..11573958hypothetical protein
LOC_Os01g20810OsAffx.11130.1.S1_at11/111+11578112..11578815hypothetical protein
LOC_Os01g20820OsAffx.22910.1.S1_at3/111+11582418..11583054hypothetical protein
LOC_Os01g20830Os.38381.1.S1_at11/111+11593565..11595186heavy metal-associated domain containing protein, expressed
LOC_Os01g20840Os.16542.1.S1_s_at11/111+11600816..11605016lipase class 3 family protein, putative, expressed
LOC_Os01g20850OsAffx.2045.2.S1_at11/111+11606735..11607126hypothetical protein
LOC_Os01g20850OsAffx.4557.1.S1_s_at1/111+11606735..11607126hypothetical protein
LOC_Os01g20860Os.46758.1.S1_s_at4/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed
LOC_Os01g20860OsAffx.661.1.S1_x_at1/111+11608139..11619557Phospholipase D. Active site motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0005507molecular_functioncopper ion binding
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38381.1.S1_at--798--5031Chr01:11594627..11594651 (25 bp)
GCAGATTCTACAGCAGCCATGATTA
LOC_Os01g20830
Os.38381.1.S1_at--872--3511Chr01:11594644..11594668 (25 bp)
CATGATTACTACTACCCTGCAGCTG
LOC_Os01g20830
Os.38381.1.S1_at--925--691Chr01:11594720..11594744 (25 bp)
ATGAGAACCCTAATGCATGCACCAT
LOC_Os01g20830
Os.38381.1.S1_at--402--4991Chr01:11594734..11594758 (25 bp)
GCATGCACCATATCCTAATCAACAT
LOC_Os01g20830
Os.38381.1.S1_at--101--3091Chr01:11594750..11594774 (25 bp)
AATCAACATGCTTTTGCCTGTCAAG
LOC_Os01g20830
Os.38381.1.S1_at--965--6531Chr01:11594934..11594958 (25 bp)
GATTTTCCTTGGCAATCACCACTAT
LOC_Os01g20830
Os.38381.1.S1_at--294--7271Chr01:11594974..11594998 (25 bp)
GTCCACTACACCTCAAGAGAATCCA
LOC_Os01g20830
Os.38381.1.S1_at--647--3031Chr01:11594993..11595017 (25 bp)
AATCCAACAAAGCTGTGGTCCTGTG
LOC_Os01g20830
Os.38381.1.S1_at--478--5991Chr01:11595049..11595073 (25 bp)
GAGACGTCACAGTATTTCCAGGCCA
LOC_Os01g20830
Os.38381.1.S1_at--860--2411Chr01:11595079..11595103 (25 bp)
AAAAACTTTGTCCTGTCTAGCATGT
LOC_Os01g20830
Os.38381.1.S1_at--775--751Chr01:11595140..11595164 (25 bp)
ATGTACATCTGATTTGCATCGCATA
LOC_Os01g20830
Target Sequence 
GCAGATTCTACAGCAGCCATGATTACTACTACCCTGCAGCTGCTGGTGGCAGAGGGAAGGGAGATGGAAGCCAGATCACC
TCCNTGTTCAGCGATGAGAACCCTAATGCATGCACCATATCCTAATCAACATGCTTTTGCCTGTCAAGAAGTAATTAAGG
TGGGGTATTATATAGTATTGATGATTAGTGTTAATTAAGATTACTGTAACATGAGATTTATGTAAAATAGTATTAATTAA
GAGGGGTGTAAGTAAGATAAGGAAAAAAGGGGAGCAATAAGATGCTTAACTTGTAGTAGTGGGAGATGATTTTCCTTGGC
AATCACCACTATTTTTTTTTTACCGCCGTCCACTACACCTCAAGAGAATCCAACAAAGCTGTGGTCCTGTGTATATGATG
TGTACTTGAAAAAAAAGTGGCAGAGACGTCACAGTATTTCCAGGCCAAATCTAAAAACTTTGTCCTGTCTAGCATGTTGG
GAATAGAGACATTTTTGTATTCTCTTGAAATATATGTACATCTGATTTGCATCGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38381.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis