Browse Element(s) Details


Os.56979.1.S1_at

Description gb:AK110671.1
DB_XREF= gi:32995880
TID=Os.56979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-G03, full insert sequence.
FL= gb:AK110671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2089411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g20870OsAffx.2046.1.S1_at7/111+11630108..11630455hypothetical protein
LOC_Os01g20880Os.45752.1.S1_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20880OsAffx.11132.2.S1_x_at11/111+11637965..11642376Protein kinase domain containing protein
LOC_Os01g20890OsAffx.11133.1.S1_at11/111+11645388..11646793hypothetical protein
LOC_Os01g20894Os.56979.1.S1_at11/111+11649742..11650182expressed protein
LOC_Os01g20894Os.56979.1.S1_x_at10/111+11649742..11650182expressed protein
LOC_Os01g20900OsAffx.11132.1.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.2.S1_x_at11/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900Os.36147.1.S1_at10/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20900OsAffx.11132.1.S1_at8/111+11659964..11664325Protein kinase domain containing protein, expressed
LOC_Os01g20910Os.45749.1.A1_at11/111+11668923..11669866Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g20920OsAffx.22904.1.S1_x_at11/111+11670469..11670831expressed protein
LOC_Os01g20920OsAffx.22904.1.S1_at11/111+11670469..11670831expressed protein
LOC_Os01g20930Os.45747.1.S1_x_at11/111+11671382..11673456Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56979.1.S1_at--1034--6291Chr01:11649910..11649934 (25 bp)
GATGACGCCGATGCGACGAGGACGG
LOC_Os01g20894
Os.56979.1.S1_at--178--6191Chr01:11649893..11649917 (25 bp)
GAGGACGGCGCCTGTGTGAGGGCGG
LOC_Os01g20894
Os.56979.1.S1_at--693--3912Chr02:16695282..16695301 (20 bp)
CGGCGCCCGTGTGCGGCTTTTTGTT
NONE
Os.56979.1.S1_at--833--3991Chr01:11649817..11649841 (25 bp)
CGTGTGCGGCTTTTTGTTATTCGTT
LOC_Os01g20894
Os.56979.1.S1_at--222--7311Chr01:11649814..11649838 (25 bp)
GTGCGGCTTTTTGTTATTCGTTGAA
LOC_Os01g20894
Os.56979.1.S1_at--860--4691Chr01:11649812..11649836 (25 bp)
GCGGCTTTTTGTTATTCGTTGAATG
LOC_Os01g20894
Os.56979.1.S1_at--112--411Chr01:11649790..11649814 (25 bp)
ATGTGTTTTTGCAGGCGGGTAAATC
LOC_Os01g20894
Os.56979.1.S1_at--138--4671Chr01:11649776..11649800 (25 bp)
GCGGGTAAATCACCGCCTGTAAAGA
LOC_Os01g20894
Os.56979.1.S1_at--872--7031Chr01:11649772..11649796 (25 bp)
GTAAATCACCGCCTGTAAAGAGGAG
LOC_Os01g20894
Os.56979.1.S1_at--624--1791Chr01:11649765..11649789 (25 bp)
ACCGCCTGTAAAGAGGAGATGTCGC
LOC_Os01g20894
Os.56979.1.S1_at--2--6271Chr01:11649748..11649772 (25 bp)
GATGTCGCCTGCGTCGCAGGCGATT
LOC_Os01g20894
Target Sequence 
GATGACGCCGATGCGACGAGGACGGCGCCTGTGTGAGGGCGGGGACGGAAGGAGGAGAGCTGCCGGCTGGAGGGGGAGGC
CGGCGGCGGCGCCCGTGTGCGGCTTTTTGTTATTCGTTGAATGTGTTTTTGCAGGCGGGTAAATCACCGCCTGTAAAGAG
GAGATGTCGCCTGCGTCGCAGGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis