Browse Element(s) Details


OsAffx.23316.1.S1_at

Description tigr:9629.m02008
TID=OsAffx.23316.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2106011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21010OsAffx.23314.1.S1_at11/111+11709906..11712524hypothetical protein
LOC_Os01g21010OsAffx.29410.1.S1_at1/111+11709906..11712524hypothetical protein
LOC_Os01g21020OsAffx.11136.1.S1_at11/111+11720346..11720848hypothetical protein
LOC_Os01g21034Os.32108.2.S1_x_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.32108.1.S1_s_at11/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034OsAffx.23254.1.S1_x_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21034Os.54835.1.S1_s_at1/111+11723865..11733166Pectinesterase-2 precursor, putative, expressed
LOC_Os01g21050OsAffx.23315.1.S1_s_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21050OsAffx.23315.2.S1_at11/111+11735217..11735885hypothetical protein
LOC_Os01g21060OsAffx.22902.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21060OsAffx.23316.1.S1_at11/111+11736261..11737574hypothetical protein
LOC_Os01g21070Os.28032.1.A1_at11/111+11739430..11742046Endoglucanase 1 precursor, putative, expressed
LOC_Os01g21080NANA1+11743886..11744494retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.28943.1.S1_x_at4/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21090Os.47130.4.A1_x_at2/111+11745114..11747076retrotransposon protein, putative, unclassified
LOC_Os01g21100NANA1+11756877..11757779expressed protein
LOC_Os01g21110OsAffx.11138.1.S1_at11/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.20956.1.S1_at1/111+11761478..11764389hypothetical protein
LOC_Os01g21110OsAffx.988.1.S1_at1/111+11761478..11764389hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23316.1.S1_at--905--9011Chr01:11736338..11736362 (25 bp)
TGCAAGCCAGCATCTAATCTTAACT
LOC_Os01g21060
OsAffx.23316.1.S1_at--91--3071Chr01:11736353..11736377 (25 bp)
AATCTTAACTTTGCAGCTTCTGCGC
LOC_Os01g21060
OsAffx.23316.1.S1_at--1022--10591Chr01:11736370..11736394 (25 bp)
TTCTGCGCGGATGCAATGTCACTCA
LOC_Os01g21060
OsAffx.23316.1.S1_at--902--751Chr01:11736385..11736409 (25 bp)
ATGTCACTCATGAATGGCCTGGTCC
LOC_Os01g21060
OsAffx.23316.1.S1_at--157--871Chr01:11736398..11736422 (25 bp)
ATGGCCTGGTCCTGAATCGAACCAA
LOC_Os01g21060
OsAffx.23316.1.S1_at--48--1951Chr01:11737441..11737462 (22 bp)
ACTGGATTCAGAGAGGACCGTCGAT
LOC_Os01g21060
OsAffx.23316.1.S1_at--466--7211Chr01:11737457..11737481 (25 bp)
GTCGATCGGTAGCAGTATGGCCCCT
LOC_Os01g21060
OsAffx.23316.1.S1_at--851--9451Chr01:11737472..11737496 (25 bp)
TATGGCCCCTGAGGTTAAGGGCCCA
LOC_Os01g21060
OsAffx.23316.1.S1_at--960--2871Chr01:11737488..11737512 (25 bp)
AAGGGCCCAAACTATGAGATTACCG
LOC_Os01g21060
OsAffx.23316.1.S1_at--504--671Chr01:11737501..11737525 (25 bp)
ATGAGATTACCGGTCCCAAGTTTCT
LOC_Os01g21060
OsAffx.23316.1.S1_at--648--3211Chr01:11737517..11737541 (25 bp)
CAAGTTTCTCCTGTTCCATTGTAAA
LOC_Os01g21060
Target Sequence 
TGCAAGCCAGCATCTAATCTTAACTTTGCAGCTTCTGCGCGGATGCAATGTCACTCATGAATGGCCTGGTCCTGAATCGA
ACCAACTCATGAACTGGATTCAGAGAGGACCGTCGATCGGTAGCAGTATGGCCCCTGAGGTTAAGGGCCCAAACTATGAG
ATTACCGGTCCCAAGTTTCTCCTGTTCCATTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis