Browse Element(s) Details


OsAffx.1830.1.S1_at

Description gb:NM_183510.1
DB_XREF= gi:34894147
GEN=P0482C06.23
TID=OsAffx.1830.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0482C06.23 (P0482C06.23), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g019103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01850NANA1+463082..469237transposon protein, putative, unclassified
LOC_Os01g01860NANA1+469876..473112transposon protein, putative, unclassified
LOC_Os01g01870Os.30044.1.S1_a_at11/111+475180..477967Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g01880Os.57330.1.S1_at11/111+479134..479757expressed protein
LOC_Os01g01890Os.9464.1.A1_at11/111+480689..483294expressed protein
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1830.1.S1_at--809--10391Chr01:492175..492199 (25 bp)
TTTTGTGTAGTTGGTTCGCCGCCGC
NONE
OsAffx.1830.1.S1_at--834--4531Chr01:492198..492222 (25 bp)
GCCCGCCGAGCACCAACAGAGACAA
NONE
OsAffx.1830.1.S1_at--618--531Chr01:492227..492251 (25 bp)
ATCGCCGAGATTTGCTTTACCTCTT
NONE
OsAffx.1830.1.S1_at--538--6051Chr01:492233..492257 (25 bp)
GAGATTTGCTTTACCTCTTGTTCAT
NONE
OsAffx.1830.1.S1_at--1037--3551Chr01:492255..492279 (25 bp)
CATCATCGTGGTTTCATTTTGCTGT
NONE
OsAffx.1830.1.S1_at--125--3591Chr01:492269..492293 (25 bp)
CATTTTGCTGTGTACTGAATCGAGG
NONE
OsAffx.1830.1.S1_at--534--9131Chr01:492274..492298 (25 bp)
TGCTGTGTACTGAATCGAGGATTGC
NONE
OsAffx.1830.1.S1_at--541--5251Chr01:492285..492309 (25 bp)
GAATCGAGGATTGCGGCGATCACGA
NONE
OsAffx.1830.1.S1_at--887--7571Chr01:493007..493030 (24 bp)
GGGCTGACGGCCTTGTCTCCGGTCA
LOC_Os01g01910
OsAffx.1830.1.S1_at--215--10811Chr01:493018..493042 (25 bp)
TTGTCTCCGGTCATCCCAGCGTGTT
LOC_Os01g01910
OsAffx.1830.1.S1_at--118--9291Chr01:493023..493047 (25 bp)
TCCGGTCATCCCAGCGTGTTCATCA
LOC_Os01g01910
Target Sequence 
TTTTGTGTAGTTGGTTCGCCGCCGCCCGCCGAGCACCAACAGAGACAAGATCATCGCCGAGATTTGCTTTACCTCTTGTT
CATCATCGTGGTTTCATTTTGCTGTGTACTGAATCGAGGATTGCGGCGATCACGAGAGGAGGGAACCACGGAGGGTAGGA
TTGGAGAGGAGTGGGGCCGCGAAGGAGGCGTGCCGGCGAAAGAAGCGGCGGCTGTGGCCGGCGACACGGCAAGCCGCCCG
GCGGGTGGGGAGAGGTCGTCGGGGCGAGGCGGGAGAGGAGGAGGCAGCGGGCGACGAGGCGGCGATGGCGGAAGCTGCGA
CGCTGGAGGGCAAGCCGCGCCGACGCTGGAGAGCGAGGACGATGGTGACGCGTTGCCGCCGTCGTCCATCCGCGGATCCC
CTTGGGCTGACGGCCTTGTCTCCGGTCATCCCAGCGTGTTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1830.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis