Browse Element(s) Details


OsAffx.23050.1.S1_x_at

Description tigr:9629.m00102
TID=OsAffx.23050.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0195011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01900NANA1+484887..489754retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g01910OsAffx.23045.1.S1_at11/111+492868..494170hypothetical protein
LOC_Os01g01910OsAffx.1830.1.S1_at3/111+492868..494170hypothetical protein
LOC_Os01g01920OsAffx.23048.1.S1_x_at11/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.23696.1.S1_x_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01920OsAffx.20956.1.S1_at1/111+495256..503049metal-dependent phosphohydrolase HD domain-containing protein, putative, expressed
LOC_Os01g01930NANA1+506189..506914hypothetical protein
LOC_Os01g01940Os.37423.1.S1_at11/111+507554..508944expressed protein
LOC_Os01g01950OsAffx.23050.1.S1_x_at11/111+509642..510304hypothetical protein
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23050.1.S1_x_at--734--2711Chr01:509705..509729 (25 bp)
AAGCATCTGGCGACCACCGCGCTGG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--630--3711Chr01:509809..509833 (25 bp)
CTACGCCAACATCGTCGAAGTCGCA
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--290--3791Chr01:509906..509930 (25 bp)
CTCGTCACCCACATGGAGCTCATGG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--940--7731Chr01:510007..510031 (25 bp)
GGTGGTGTGGCGCTACAAGATGGAC
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--834--7731Chr01:510040..510064 (25 bp)
GGTGTGGCTCGGCAACGCGCGGAAG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--754--8231Chr01:510050..510074 (25 bp)
GGCAACGCGCGGAAGAAGCTCCTCG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--647--1791Chr01:510142..510166 (25 bp)
ACCCGACGTCCGCAGTCAGTGGACG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--1102--1871Chr01:510147..510171 (25 bp)
ACGTCCGCAGTCAGTGGACGGCCGC
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--482--8311Chr01:510183..510207 (25 bp)
GGCTCTTCGGAGCACTCGGTCACCT
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--290--3811Chr01:510206..510230 (25 bp)
CTCCGCGGAGCGTGCAACATCATCG
LOC_Os01g01950
OsAffx.23050.1.S1_x_at--395--4691Chr01:510210..510234 (25 bp)
GCGGAGCGTGCAACATCATCGCCAA
LOC_Os01g01950
Target Sequence 
AAGCATCTGGCGACCACCGCGCTGGGGGCGCTGCGCCTCGTCACCATCTCCGCCTCCGACGCCTACTCCCATACCTTGGA
CGCGCTCCACGCCCTCCGCTCCGCCTACGCCAACATCGTCGAAGTCGCACCACCCGATCTCGCCGCCGCGGAGGCTCTCC
TCGCCCACGACTGCAACCACTCCATCGCCCTGGCCTCGCGCCTCGTCACCCACATGGAGCTCATGGCCATGGAGGCCACC
ATCCACGTCGACCGCTGGCTCACCTCCACCGACGCCGCCGNNNNNNNNNNNNGGATTCCGGCGGTGGTGTGGCGCTACAA
GATGGACGCGGTGGTGGTGTGGCTCGGCAACGCGCGGAAGAAGCTCCTCGACGCCAGCGCCGACTGCCACGCCGTCACCC
CCCTCCTCGCCGTCGCCGCCGCCGTCGACGAGTACGCACCCGACGTCCGCAGTCAGTGGACGGCCGCCGCCAACACGGGG
CTCTTCGGAGCACTCGGTCACCTCCGCGGAGCGTGCAACATCATCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23050.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis