Browse Element(s) Details


Os.22967.1.S1_s_at

Description gb:CA754859
DB_XREF= gi:25798898
DB_XREF=BR030007002_BR030_C05_35_036.ab1
CLONE=BR030007002_BR030_C05_35_036.ab1
TID=Os.22967.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.22967 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_568436.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0207011/11heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os01g019701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
GO:0046872molecular_functionmetal ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22967.1.S1_s_at--1011--571Chr03:636090..636114 (25 bp)
ATCCACAGTTTCAACACTTCTTCAG
LOC_Os03g02070
Os.22967.1.S1_s_at--423--10511Chr03:636081..636105 (25 bp)
TTCAACACTTCTTCAGATGGCTCAG
LOC_Os03g02070
Os.22967.1.S1_s_at--713--2891Chr03:635895..635919 (25 bp)
AAGGTTCCAACCATGACTGACGAAA
LOC_Os03g02070
Os.22967.1.S1_s_at--686--10231Chr03:635227..635251 (25 bp)
TATTGATTCGATAGCTGCAGACCTC
LOC_Os03g02070
Os.22967.1.S1_s_at--258--531Chr03:635127..635151 (25 bp)
ATCGACATCGTTTCTGTTGGACCTG
LOC_Os03g02070
Os.22967.1.S1_s_at--23--5391Chr03:635003..635027 (25 bp)
GAAGCAACTCATCTCGAAGCCAATA
LOC_Os03g02070
Os.22967.1.S1_s_at--257--5431Chr03:634988..635012 (25 bp)
GAAGCCAATATCATCACGCGAACGG
LOC_Os03g02070
Os.22967.1.S1_s_at--994--2732Chr03:634960..634984 (25 bp)
AAGAAAAAGCTTGATTCCCCTCCTG
LOC_Os03g02070
Os.22967.1.S1_s_at--598--1131Chr03:634935..634959 (25 bp)
AGTGCTGTCCCTGTTTCGAAATGAT
LOC_Os03g02070
Os.22967.1.S1_s_at--477--2371Chr03:634873..634897 (25 bp)
AAACCTTTTTGCACATCACGTCGAA
LOC_Os03g02070
Os.22967.1.S1_s_at--934--4031Chr03:634848..634872 (25 bp)
CGTTGTTTTCTCATCGTGTTAGCTA
LOC_Os03g02070
Target Sequence 
ATCCACAGTTTCAACACTTCTTCAGATGGCTCAGNNNAAGGTGGTGCTCAAGGTTCCAACCATGACTGACGAAAAGACGA
AGCAGAAAGCGATCGAAGCCGTCGCAGATATCTACGGTATTGATTCGATAGCTGCAGACCTCAAGGACAACAAGATGACC
ATCATNGGCGACATGGACACCGTCGAGATAGCGAAGAAGCTGAGGAAGATCGGCAAGATCGACATCGTTTCTGTTGGACC
TGCCNAAGGAAGAGAAGAAGCCAGAGAAGAAGGAAGAGAAGAAAGAAGAGAAGAAAGAGGAGAAGAAAGAGGAGAAGAAG
GAAGAGAAGAAAGGCAAGAAATGAAGCAACTCATCTCGAAGCCAATATCATCACGCGAACGGCAAAAGAAAAAGCTTGAT
TCCCCTCCTGAGTGCTGTCCCTGTTTCGAAATGATCATTTTGTACACTGTATACACCACAGCTACAGAAATCAAACCTTT
TTGCACATCACGTCGAACGTTGTTTTCTCATCGTGTTAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22967.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis