Browse Element(s) Details


Os.9138.1.S1_at

Description gb:AK108282.1
DB_XREF= gi:32993491
TID=Os.9138.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-D02, full insert sequence.
FL= gb:AK108282.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3650011/11Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g021001/11Valyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006418biological_processtRNA aminoacylation for protein translation
GO:0010200biological_processresponse to chitin
GO:0050832biological_processdefense response to fungi
GO:0004812molecular_functionaminoacyl-tRNA ligase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9138.1.S1_at--549--9291Chr09:21056614..21056638 (25 bp)
TCCCGGTGCACGTGGTCCAGATGCC
LOC_Os09g36500
Os.9138.1.S1_at--227--6091Chr09:21056279..21056303 (25 bp)
GAGTCCCGCGTGCTTCCTGCGATTT
LOC_Os09g36500
Os.9138.1.S1_at--556--4631Chr09:21056261..21056285 (25 bp)
GCGATTTGATTTTGCTACGAGTACT
LOC_Os09g36500
Os.9138.1.S1_at--844--10271Chr09:21056251..21056275 (25 bp)
TTTGCTACGAGTACTCATCAGCTGT
LOC_Os09g36500
Os.9138.1.S1_at--266--2011Chr09:21056239..21056263 (25 bp)
ACTCATCAGCTGTAATAGGGTACTT
LOC_Os09g36500
Os.9138.1.S1_at--251--3671Chr09:21056217..21056241 (25 bp)
CTTAGTAGGTGTTTAGCTCAATTTT
LOC_Os09g36500
Os.9138.1.S1_at--950--4832Chr03:650007..650026 (20 bp)
GCTCAATTTTGCTAGCTGTGGACAA
LOC_Os03g02100
Os.9138.1.S1_at--267--7511Chr09:21056185..21056209 (25 bp)
GTGGACAAACGTAGCTTAGTAGGAT
LOC_Os09g36500
Os.9138.1.S1_at--249--7991Chr09:21056164..21056188 (25 bp)
GGATGATTCGAGTTTGTTTATTGGC
LOC_Os09g36500
Os.9138.1.S1_at--451--5951Chr09:21056137..21056161 (25 bp)
GAGCAATAACGATCATACGAGTAGT
LOC_Os09g36500
Os.9138.1.S1_at--579--6052Chr12:7414495..7414566 (24 bp)
GAGTAGTTTCACTTTCAGGGTTACA
NONE
Target Sequence 
TCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGC
GCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTG
CGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGG
ACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTC
CTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTT
AGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAG
CAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis