Browse Element(s) Details


Os.9513.1.S2_a_at

Description gb:AK069488.1
DB_XREF= gi:32979512
TID=Os.9513.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9513 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021B06, full insert sequence.
FL= gb:AK069832.1 gb:AK069488.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3645010/11Triosephosphate isomerase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36430OsAffx.30151.1.S1_at10/119+21025775..21026385hypothetical protein
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0004807molecular_functiontriose-phosphate isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9513.1.S2_a_at--607--3531Chr09:21033624..21033648 (25 bp)
CATGCTGCTGTTCGTGATTGGTTGA
LOC_Os09g36450
Os.9513.1.S2_a_at--475--3851Chr09:21033584..21033608 (25 bp)
CTGAGGTTGCTTCCGGCATTCGAAT
LOC_Os09g36450
Os.9513.1.S2_a_at--296--2291Chr09:21033182..21033206 (25 bp)
AAATGCAGCCAATTGTGCCGAGCTA
LOC_Os09g36450
Os.9513.1.S2_a_at--994--1251Chr09:21033146..21033170 (25 bp)
AGATATTGACGGCTTCCTTGTTGGT
LOC_Os09g36450
Os.9513.1.S2_a_at--942--8971NONE
TGAAGGGTCCGGATTTTGCCACTAT
NONE
Os.9513.1.S2_a_at--746--1671Chr09:21032935..21032959 (25 bp)
AGCCTGATGTAACCCTTCTGTAGAA
LOC_Os09g36450
Os.9513.1.S2_a_at--562--8311Chr09:21032885..21032909 (25 bp)
GGCTACCACACCATATTGCTTGATA
LOC_Os09g36450
Os.9513.1.S2_a_at--666--9891Chr09:21032856..21032880 (25 bp)
TACTTCGTGTTCAATCACCGTGCTT
LOC_Os09g36450
Os.9513.1.S2_a_at--773--6811Chr09:21032790..21032814 (25 bp)
GTTTTTTCTCATAGACCTGGCTGGC
LOC_Os09g36450
Os.9513.1.S2_a_at--339--3171Chr09:21032713..21032737 (25 bp)
AATTGCTGCTATATGTGGTGTTACC
LOC_Os09g36450
Os.9513.1.S2_a_at--14--8631Chr09:21032698..21032722 (25 bp)
TGGTGTTACCCGACATCTGTGGAAG
LOC_Os09g36450
Target Sequence 
CATGCTGCTGTTCGTGATTGGTTGAAAACCAACGTGTCACCTGAGGTTGCTTCCGGCATTCGAATTATNTATGGAGGTTC
TGTAAATGCAGCCAATTGTGCCGAGCTAGCAAAGAAAGAAGATATTGACGGCTTCCTTGTTGGTGGTGCCTCTTTGAAGG
GTCCGGATTTTGCCACTATTATCAACTCGGTGACTTCCAAGAAAGTTGCAGCCTGATGTAACCCTTCTGTAGAAATAAAT
GACCCAGAGGCAGCGAGACGGCTACCACACCATATTGCTTGATAGAGATACTTCGTGTTCAATCACCGTGCTTGTTTTGG
CACACGAGGGAATAATGCAAGATGCCACTGTGTTGTTTTTTCTCATAGACCTGGCTGGCGTTACGAGAGCCTATTATTTG
TTAGTGAGTGAGTGACCAATAACACGTGAAAAATTGCTGCTATATGTGGTGTTACCCGACATCTGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9513.1.S2_a_at     

Putative homologies in rice

Putative homologies in arabidopsis