Browse Element(s) Details


OsAffx.22448.1.S1_at

Description gb:NM_186593.1
DB_XREF= gi:34900271
GEN=OSJNBa0031C24.47
TID=OsAffx.22448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0031C24.47 (OSJNBa0031C24.47), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g364201/11Hsp90 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36430OsAffx.30151.1.S1_at10/119+21025775..21026385hypothetical protein
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009934biological_processregulation of meristem organization
GO:0010075biological_processregulation of meristem size
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22448.1.S1_at--319--2491Chr07:6639506..6639530 (25 bp)
AACAGCTCTGGGAGATGGAGTCCAT
NONE
OsAffx.22448.1.S1_at--992--6231Chr07:6639519..6639543 (25 bp)
GATGGAGTCCATGATCTGGTTGTAA
NONE
OsAffx.22448.1.S1_at--567--6111Chr07:6639523..6639547 (25 bp)
GAGTCCATGATCTGGTTGTAAAGCA
NONE
OsAffx.22448.1.S1_at--1059--9831Chr07:6639541..6639658 (25 bp)
TAAAGCAGGAGCACGGACTGCCTCT
NONE
OsAffx.22448.1.S1_at--123--8133Chr07:6670567..6670591 (25 bp)
GGACTGCCTCTCAAGCAGGTTGCTA
NONE
OsAffx.22448.1.S1_at--40--9713Chr07:6670577..6670601 (25 bp)
TCAAGCAGGTTGCTACCCTATTGGC
NONE
OsAffx.22448.1.S1_at--864--9954Chr07:6670590..6670614 (25 bp)
TACCCTATTGGCTTTGCCCATCTAC
NONE
OsAffx.22448.1.S1_at--184--8491Chr07:6639679..6639702 (24 bp)
TGGCTTTGCCCATCTACTGGACAGA
NONE
OsAffx.22448.1.S1_at--57--10711Chr07:6639684..6639895 (25 bp)
TTGCCCATCTACTGGACAGACCTCA
NONE
OsAffx.22448.1.S1_at--2--9931Chr07:6639693..6639904 (25 bp)
TACTGGACAGACCTCACCCTTCATG
NONE
OsAffx.22448.1.S1_at--791--10535Chr09:21018017..21018038 (22 bp)
TTCATGCACCGTCCGATGTCCACGG
LOC_Os09g36420
Target Sequence 
AACAGCTCTGGGAGATGGAGTCCATGATCTGGTTGTAAAGCAGGAGCACGGACTGCCTCTCAAGCAGGTTGCTACCCTAT
TGGCTTTGCCCATCTACTGGACAGACCTCACCCTTCATGCACCGTCCGATGTCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis