Browse Element(s) Details


OsAffx.30150.5.S1_s_at

Description gb:AK108434.1
DB_XREF= gi:32993643
TID=OsAffx.30150.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-B03, full insert sequence.
FL= gb:AK108434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3637011/11ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g364202/11Hsp90 protein, expressed
LOC_Os08g434701/11ER lumen protein retaining receptor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009934biological_processregulation of meristem organization
GO:0010075biological_processregulation of meristem size
GO:0015031biological_processprotein transport
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0005783cellular_componentendoplasmic reticulum
GO:0016021cellular_componentintegral to membrane
GO:0004872molecular_functionreceptor activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30150.5.S1_s_at--738--10811Chr09:20990753..20990777 (25 bp)
TTGTGAACCGTATCAGCTGGGCATT
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--333--10871Chr09:20990788..20990812 (25 bp)
TTGGAAGCTGTCTCAGTTCTACCAC
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--77--1231Chr09:20990802..20990826 (25 bp)
AGTTCTACCACAGCTGCGTTTGATG
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--839--6571Chr09:20990906..20990930 (25 bp)
GATTGTTGAGCCGTTCACAGCACAC
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--551--3211Chr09:20990953..20990977 (25 bp)
CAAGGTTTCTTAGCTGTGCACACTG
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--44--7351Chr09:20990968..20990989 (22 bp)
GTGCACACTGGGTTCTTCAGGTATT
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--17--1991Chr09:20991503..20991527 (25 bp)
ACTGCTCTGGGCTATGGCTTGTGGC
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--673--3633Chr12:3507674..3507696 (22 bp)
CTTGCTGATTTCTGCTACTACTATG
NONE
OsAffx.30150.5.S1_s_at--958--8631Chr09:20991684..20991708 (25 bp)
TGGGCAGCTGGTGCTACGGCTTCCA
LOC_Os09g36370
OsAffx.30150.5.S1_s_at--157--4592Chr09:21017698..21017722 (25 bp)
GCGAATGTGCTGATACTTTGGTTCA
LOC_Os09g36420
OsAffx.30150.5.S1_s_at--948--3672Chr09:21017713..21017737 (25 bp)
CTTTGGTTCAATTTAGCTTCTGGGT
LOC_Os09g36420
Target Sequence 
TTGTGAACCGTATCAGCTGGGCATTTTGTGTTTACTTGGAAGCTGTCTCAGTTCTACCACAGCTGCGTTTGATGCAAAAC
ACAAAGATTGTTGAGCCGTTCACAGCACACTATGTGTTTGCATTGGGAGTTGCAAGGTTTCTTAGCTGTGCACACTGGGT
TCTTCAGGTATTGGATACTCGTGGTCGATTGTTGACTGCTCTGGGCTATGGCTTGTGGCCATCTATGGTGCTTCTGTCGG
AAATCGTGCAGACATTCATCCTTGCTGATTTCTGCTACTACTATGTGAAGAGTTTGGTCGGTGGGCAGCTGGTGCTACGG
CTTCCATCTGGGGTGGTGTAAGAACTGTAGAAGGATACAAAGCTTCCAGCTTCACCCATTTTTATGTACTCTGAATAACA
GTTATGTTCTAGTGTCCGACCTTCTGTGTCTCTTACCAAGACCGAGACCGGAGCCTTTTTTTTACTTGATATTTTGAGGT
ATAACTATTAATGACAAGTGCACTAGAGTCTTCTTAAACATAGGTCGTTGAATGACTGTTTATAGTTGCGAATGTGCTGA
TACTTTGGTTCAATTTAGCTTCTGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30150.5.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis