Browse Element(s) Details


Os.17034.1.S1_at

Description gb:AK070024.1
DB_XREF= gi:32980048
TID=Os.17034.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17034 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038G05, full insert sequence.
FL= gb:AK070024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3632011/11serine/threonine-protein kinase NAK, putative, expressed
LOC_Os03g447101/11YABBY protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009909biological_processregulation of flower development
GO:0009933biological_processmeristem organization
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0010154biological_processfruit development
GO:0010158biological_processabaxial cell fate specification
GO:0010254biological_processnectary development
GO:0045165biological_processcell fate commitment
GO:0045449biological_processregulation of transcription
GO:0048440biological_processcarpel development
GO:0048481biological_processovule development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016301molecular_functionkinase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17034.1.S1_at--864--5631Chr09:20962211..20962235 (25 bp)
GACAGCCGCAACTTCCGCATGATCA
LOC_Os09g36320
Os.17034.1.S1_at--1097--2051Chr09:20962201..20962225 (25 bp)
ACTTCCGCATGATCATGGATCCCAG
LOC_Os09g36320
Os.17034.1.S1_at--1090--711Chr09:20962193..20962217 (25 bp)
ATGATCATGGATCCCAGGCTCCGCG
LOC_Os09g36320
Os.17034.1.S1_at--899--9291Chr09:20962174..20962198 (25 bp)
TCCGCGGCGAGTACTCCGTCAAGGC
LOC_Os09g36320
Os.17034.1.S1_at--141--991Chr09:20961956..20961980 (25 bp)
AGGAGGTGAGGTTGCACTCTGCTGC
LOC_Os09g36320
Os.17034.1.S1_at--328--2011Chr09:20961941..20961965 (25 bp)
ACTCTGCTGCTATCATCGATCACGG
LOC_Os09g36320
Os.17034.1.S1_at--119--4771Chr09:20961936..20961960 (25 bp)
GCTGCTATCATCGATCACGGCATGA
LOC_Os09g36320
Os.17034.1.S1_at--57--3551Chr09:20961928..20961952 (25 bp)
CATCGATCACGGCATGAATGAAGAA
LOC_Os09g36320
Os.17034.1.S1_at--185--2791Chr09:20961890..20961914 (25 bp)
AAGAGAGACACAGAGACGAGTTGGT
LOC_Os09g36320
Os.17034.1.S1_at--348--4051Chr09:20961874..20961898 (25 bp)
CGAGTTGGTGGATTCTTGGCGTTTT
LOC_Os09g36320
Os.17034.1.S1_at--973--13Chr03:25155908..25155928 (21 bp)
ATTGGTAGATAACTACTCCCTCCGT
LOC_Os03g44710
Target Sequence 
GACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAA
GCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCG
TCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCG
CCGCAGCCGGCGAGGAGGAGGTGAGGTTGCACTCTGCTGCTATCATCGATCACGGCATGAATGAAGAAAGAAAAGTACNG
NAAAGAGAGACACAGAGACGAGTTGGTGGATTCTTGGCGTTTTTGTTTTTTGTTTTCCTTTCTATTTTTTAGGCTTATTT
AGGATGAGGATAGTAGTATGAGAATACATTTGATTTGATTGGTAGATAACTACTCCCTCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17034.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis