Browse Element(s) Details


Os.12157.1.S1_at

Description gb:AK073741.1
DB_XREF= gi:32983764
TID=Os.12157.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067A21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067A21, full insert sequence.
FL= gb:AK073741.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3629011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12157.1.S1_at--2--9391Chr09:20944429..20944453 (25 bp)
TCGATCAACTCTGGGTTCTTCGCCA
LOC_Os09g36290
Os.12157.1.S1_at--864--5291Chr09:20944476..20944500 (25 bp)
GAAGGCCGCCTTCATAGGGCATGAT
LOC_Os09g36290
Os.12157.1.S1_at--496--8491Chr09:20944530..20944554 (25 bp)
TGGCATTCAGCTGTGCTATGCTGGT
LOC_Os09g36290
Os.12157.1.S1_at--691--8611Chr09:20944607..20944631 (25 bp)
TGGTGTCCGTGCAGCTTGAGAAGTC
LOC_Os09g36290
Os.12157.1.S1_at--412--1091Chr09:20944643..20944667 (25 bp)
AGTGGCGAGGTGTGAAGTCCATCAA
LOC_Os09g36290
Os.12157.1.S1_at--874--10751Chr09:20944706..20944730 (25 bp)
TTGACTCAGAAGTCCTCTGGAACAG
LOC_Os09g36290
Os.12157.1.S1_at--553--2131Chr09:20944727..20945135 (25 bp)
ACAGAGGCTCCAATGGAAGGCGCAA
LOC_Os09g36290
Os.12157.1.S1_at--1045--7351Chr09:20945189..20945213 (25 bp)
GTGAAATGTTGCAACGTACTACACG
LOC_Os09g36290
Os.12157.1.S1_at--516--1891Chr09:20945211..20945235 (25 bp)
ACGTTATGATGTGCTGTTTGCCAAT
LOC_Os09g36290
Os.12157.1.S1_at--809--2391Chr09:20945271..20945295 (25 bp)
AAAAACATGGTACACGACACGGCAT
LOC_Os09g36290
Os.12157.1.S1_at--1072--631Chr09:20945294..20945318 (25 bp)
ATGCACCCTTTTCGCGGTTGTAATT
LOC_Os09g36290
Target Sequence 
TCGATCAACTCTGGGTTCTTCGCCAGCATGGTGGAGGCTGGGGATGTGAAGGCCGCCTTCATAGGGCATGATCATGTGAA
CGACTTCNGTGGAAAGCTCAATGGCATTCAGCTGTGCTATGCTGGTGGATTTGGGTACCATGCGTATGGGAAGGCCGGGT
GGTCGAGGAGAGCGAGGGTGGTGTCCGTGCAGCTTGAGAAGTCGGACGGCGGCGAGTGGCGAGGTGTGAAGTCCATCAAG
ACATGGAAGAGGCTTGATGATCCACATCTCACCACAATTGACTCAGAAGTCCTCTGGAACAGAGGCTCCAATGGAAGGCG
CAAGAAGAATCCTGATGGAAAGATGAGATAGTGATATAGATGGGAAGACGGGGATAGTGAAATGTTGCAACGTACTACAC
GTTATGATGTGCTGTTTGCCAATTTGTTTTACAAAATTTTCGATTTATGTAAATGAACAAAAACATGGTACACGACACGG
CATGCACCCTTTTCGCGGTTGTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis