Browse Element(s) Details


OsAffx.18009.1.S1_s_at

Description tigr:9637.m03053
TID=OsAffx.18009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 17
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3628011/11Glycosyl hydrolases family 17 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18009.1.S1_s_at--595--9171Chr09:20938357..20938381 (25 bp)
TGCCGATCGCGGTGACGGAGACCGG
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--743--4451Chr09:20938286..20938310 (25 bp)
GCCTACAACGCCAAGATCGTGGAGC
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--800--2191Chr09:20938282..20938306 (25 bp)
ACAACGCCAAGATCGTGGAGCGGGT
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--462--6691Chr09:20938209..20938233 (25 bp)
GTTCCTGTTCGACCTGTACGACGAG
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--969--6051Chr09:20938166..20938190 (25 bp)
GAGTTCGAGAGGCACTTCGGCATCT
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--613--4071Chr09:20938161..20938185 (25 bp)
CGAGAGGCACTTCGGCATCTTCAGG
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--1142--2031Chr09:20938153..20938177 (25 bp)
ACTTCGGCATCTTCAGGGCGGACGG
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--998--8111Chr09:20938134..20938158 (25 bp)
GGACGGGAGCAAGGCTTATAACATC
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--170--8071Chr09:20938129..20938153 (25 bp)
GGAGCAAGGCTTATAACATCAACTT
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--876--371Chr09:20938112..20938136 (25 bp)
ATCAACTTTGCTTAGAACTTGCCTG
LOC_Os09g36280
OsAffx.18009.1.S1_s_at--492--10271Chr09:20938106..20938130 (25 bp)
TTTGCTTAGAACTTGCCTGTATTTG
LOC_Os09g36280
Target Sequence 
TGCCGATCGCGGTGACGGAGACCGGGTGGCCGACGGCGGGGCACCCGGCGGCGACACCGCAGAACGCCGCCGCCTACAAC
GCCAAGATCGTGGAGCGGGTGGCGCGCGGCGCCGGCACGCCGCGGCGGCCAGGCGTGCCCGTGGAGGTGTTCCTGTTCGA
CCTGTACGACGAGGACGGCAAGCCCGGCGCCGAGTTCGAGAGGCACTTCGGCATCTTCAGGGCGGACGGGAGCAAGGCTT
ATAACATCAACTTTGCTTAGAACTTGCCTGTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18009.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis