Browse Element(s) Details


OsAffx.18010.1.S1_at

Description tigr:9637.m03056
TID=OsAffx.18010.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3631010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18010.1.S1_at--671--7751Chr09:20960575..20960599 (25 bp)
GGTGTTGCACGGGATGATGGCGCCG
LOC_Os09g36310
OsAffx.18010.1.S1_at--364--6231NONE
GATGGCGCCGCAAAGGAGCAGAGGA
NONE
OsAffx.18010.1.S1_at--785--3531Chr09:20959323..20959347 (25 bp)
CATCCGCCGTGAGAGTCGTGGAACG
LOC_Os09g36310
OsAffx.18010.1.S1_at--476--5971Chr09:20959286..20959310 (25 bp)
GAGAACCACGGCTTCCACAACGCAG
LOC_Os09g36310
OsAffx.18010.1.S1_at--869--3631Chr09:20959275..20959299 (25 bp)
CTTCCACAACGCAGCAATGCGGGTT
LOC_Os09g36310
OsAffx.18010.1.S1_at--437--5051Chr09:20959265..20959289 (25 bp)
GCAGCAATGCGGGTTAACACCGCGA
LOC_Os09g36310
OsAffx.18010.1.S1_at--588--591Chr09:20959259..20959283 (25 bp)
ATGCGGGTTAACACCGCGAGCGCCA
LOC_Os09g36310
OsAffx.18010.1.S1_at--321--6531Chr09:20959198..20959222 (25 bp)
GATTTGATCAAATCGGTGGCTTCCG
LOC_Os09g36310
OsAffx.18010.1.S1_at--526--8831Chr09:20959194..20959218 (25 bp)
TGATCAAATCGGTGGCTTCCGCAGC
LOC_Os09g36310
OsAffx.18010.1.S1_at--1105--9691Chr09:20959191..20959215 (25 bp)
TCAAATCGGTGGCTTCCGCAGCCGA
LOC_Os09g36310
OsAffx.18010.1.S1_at--389--7731Chr09:20959184..20959208 (25 bp)
GGTGGCTTCCGCAGCCGACGCCGAT
LOC_Os09g36310
Target Sequence 
GGTGTTGCACGGGATGATGGCGCCGCAAAGGAGCAGAGGACGGAGCCGACAACATCCACGCCGCGGGAGCCGGGGACGGC
ACCACCATCCGCCGTGAGAGTCGTGGAACGGGAGCCGCCGGCGAGAACCACGGCTTCCACAACGCAGCAATGCGGGTTAA
CACCGCGAGCGCCATCTCCCCTCACTTCTTTGTGTGGGGTGGGTGAGGATGATTTGATCAAATCGGTGGCTTCCGCAGCC
GACGCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis