Browse Element(s) Details


OsAffx.6493.1.S1_at

Description tigr:9637.m03059
TID=OsAffx.6493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to F10A5.11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3634010/11HVA22-like protein i, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein
LOC_Os09g36390OsAffx.18012.1.S1_at11/119+20997164..20998417hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6493.1.S1_at--376--2811Chr09:20974590..20974614 (25 bp)
GCTGGTTTTAGGATACGCCTACCCG
LOC_Os09g36340
OsAffx.6493.1.S1_at--1030--9951Chr09:20974571..20974595 (25 bp)
TACCCGGCGTATGACTGCTACAAGA
LOC_Os09g36340
OsAffx.6493.1.S1_at--539--6391Chr09:20974524..20974548 (25 bp)
GATCGATCAGTTGCGTTTCTGGTGT
LOC_Os09g36340
OsAffx.6493.1.S1_at--585--8731Chr09:20974407..20974526 (25 bp)
TGTCAGTACTGGATTCTCCTCGCGT
LOC_Os09g36340
OsAffx.6493.1.S1_at--950--3791Chr09:20974389..20974413 (25 bp)
CTCGCGTTTCTGACGACGTTGGAGA
LOC_Os09g36340
OsAffx.6493.1.S1_at--391--1891Chr09:20974374..20974398 (25 bp)
ACGTTGGAGACGATCACCTATTTCA
LOC_Os09g36340
OsAffx.6493.1.S1_at--1017--10191Chr09:20974356..20974380 (25 bp)
TATTTCACGGTCTCATGGCTGCCCA
LOC_Os09g36340
OsAffx.6493.1.S1_at--1158--6991Chr09:20974330..20974354 (25 bp)
GTACGGCGAGGCAAAGCTTGCGCTC
LOC_Os09g36340
OsAffx.6493.1.S1_at--268--7831NONE
GGTACCCAAAGACACGAGGCGCGAA
NONE
OsAffx.6493.1.S1_at--115--5391Chr09:20973528..20973552 (25 bp)
GAAGCACGTCTACGAGAGCTACCTG
LOC_Os09g36340
OsAffx.6493.1.S1_at--87--3931Chr09:20971368..20971388 (21 bp)
CGGCCAGGCTGACCAATTGCAGAAG
LOC_Os09g36340
Target Sequence 
GCTGGTTTTAGGATACGCCTACCCGGCGTATGACTGCTACAAGACGCTGGAACTGAACAAACCGCAGATCGATCAGTTGC
GTTTCTGGTGTCAGTACTGGATTCTCCTCGCGTTTCTGACGACGTTGGAGACGATCACCTATTTCACGGTCTCATGGCTG
CCCATGTACGGCGAGGCAAAGCTTGCGCTCGTGCTCTACCTCTGGTACCCAAAGACACGAGGCGCGAAGCACGTCTACGA
GAGCTACCTGCAGCCGGTGCTGGCGAGGCACGAGGCCGACATCGACCGCGGCCTGCTGCAGCTACGCGCCAGCGCCAAGG
ACGCGACGGCGTCGCACCTCCAGGCCGCCGTGTCCTTGGGGCGGGCCTGCTTCGCCGAAGTCGCCGGCCGCGTCTCGTCG
CAGCTGCAGGCGGCGAGAAGCAGCGGCGGCGGCGGCCGCGCCGGCCAGGCTGACCAATTGCAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis