Browse Element(s) Details


Os.10851.1.S1_at

Description gb:AF464908.1
DB_XREF= gi:18481631
GEN=TFIIB
TID=Os.10851.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.10851 (NCBI UniGene Cluster)
DEF=Oryza sativa general transcription factor TFIIB (TFIIB) mRNA, complete cds.
PROD=general transcription factor TFIIB
FL= gb:AK058238.1 gb:AK068941.1 gb:AF464908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3644011/11Transcription initiation factor IIB, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36430OsAffx.30151.1.S1_at10/119+21025775..21026385hypothetical protein
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003702molecular_functionRNA polymerase II transcription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10851.1.S1_at--662--5431Chr09:21030458..21030482 (25 bp)
GAACCATCCATGCTGGAGATTTCCT
LOC_Os09g36440
Os.10851.1.S1_at--224--8551Chr09:21030471..21030577 (25 bp)
TGGAGATTTCCTGAGGCGTTTCTGT
LOC_Os09g36440
Os.10851.1.S1_at--264--1671Chr09:21030613..21030637 (25 bp)
AGCCCAGGAAGCAGTTCAGCGTTCA
LOC_Os09g36440
Os.10851.1.S1_at--464--9871Chr09:21031073..21031097 (25 bp)
TACATGATAACCCAACTCTCAGATG
LOC_Os09g36440
Os.10851.1.S1_at--460--4291Chr09:21031106..21031205 (25 bp)
CCTCTGAAAGACATATCCTTGGCTA
LOC_Os09g36440
Os.10851.1.S1_at--467--571Chr09:21031195..21031219 (25 bp)
ATCCTTGGCTACTGGTGTGGCAGAA
LOC_Os09g36440
Os.10851.1.S1_at--121--7971Chr09:21031243..21031267 (25 bp)
GGATCTGTATCCCTATGCTTCAAGG
LOC_Os09g36440
Os.10851.1.S1_at--423--531Chr09:21031271..21031295 (25 bp)
ATCCCAAACACCTATGCCAAGGAGG
LOC_Os09g36440
Os.10851.1.S1_at--671--5831Chr09:21031298..21031322 (25 bp)
GACCTGAAGAATCTGTGCACACCAT
LOC_Os09g36440
Os.10851.1.S1_at--855--8551Chr09:21031397..21031421 (25 bp)
TGGATGTGAGTTTTACTGGCCCATG
LOC_Os09g36440
Os.10851.1.S1_at--163--4551Chr09:21031415..21031439 (25 bp)
GCCCATGTATCACTGCACCTAATTT
LOC_Os09g36440
Target Sequence 
GAACCATCCATGCTGGAGATTTCCTGAGGCGTTTCTGTTCAACTCTTGGGATGAACNATCAAGCTGTTAAAGCAGCCCAG
GAAGCAGTTCAGCGTTCAGAGGAACTTGATATAAGGAGGAGTCCTATTTCCANTTGCGGCTGCTGTCATTTACATGATAA
CCCAACTCTCAGATGATAAGAAGCCTCTGAAAGACATATCCTTGGCTACTGGTGTGGCAGAAGGTACCATCAGAAATTCA
TACAAGGATCTGTATCCCTATGCTTCAAGGCTCATCCCAAACACCTATGCCAAGGAGGAAGACCTGAAGAATCTGTGCAC
ACCATAGGAAATTTTTTTCTTTTCTTTTTTGTCACATAACATGGAAATTAGATTTGCCAGAGAGGAGTAATGTTGTCCTT
GGATGTGAGTTTTACTGGCCCATGTATCACTGCACCTAATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis