Browse Element(s) Details


OsAffx.30151.1.S1_at

Description tigr:9637.m03068
TID=OsAffx.30151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3643010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36400NANA9+21002611..21006961hypothetical protein
LOC_Os09g36410OsAffx.25007.2.S1_s_at10/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.2.S1_at9/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36410OsAffx.25007.1.S1_at4/119+21007532..21010930retrotransposon protein, putative, unclassified
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36430OsAffx.30151.1.S1_at10/119+21025775..21026385hypothetical protein
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30151.1.S1_at--792--5991Chr09:21026369..21026390 (22 bp)
GAGAGATGGACTCGGATTCAAGCAC
NONE
OsAffx.30151.1.S1_at--492--8851Chr09:21026240..21026264 (25 bp)
TGATCGATACAAGCAGTCACCAGAT
LOC_Os09g36430
OsAffx.30151.1.S1_at--1067--411Chr09:21026212..21026236 (25 bp)
ATCATCCATTCATCATCTCTGCAAT
LOC_Os09g36430
OsAffx.30151.1.S1_at--285--9611Chr09:21026200..21026224 (25 bp)
TCATCTCTGCAATTCAGTTCAGCGG
LOC_Os09g36430
OsAffx.30151.1.S1_at--726--1291Chr09:21026028..21026052 (25 bp)
AGATCCATTGGAACCTGCAGCTCGA
LOC_Os09g36430
OsAffx.30151.1.S1_at--552--8711Chr09:21025989..21026013 (25 bp)
TGTCCGTCGCTTGTGTGGCGTTCTG
LOC_Os09g36430
OsAffx.30151.1.S1_at--505--5711Chr09:21025909..21025933 (25 bp)
GACTACATGAGTGGACCGTTCGCCG
LOC_Os09g36430
OsAffx.30151.1.S1_at--816--7291Chr09:21025873..21025897 (25 bp)
GTGCCCTGCGTAGTGATCACTCCTA
LOC_Os09g36430
OsAffx.30151.1.S1_at--785--6431Chr09:21025859..21025883 (25 bp)
GATCACTCCTATAGTAACCGTGGCT
LOC_Os09g36430
OsAffx.30151.1.S1_at--32--2631Chr09:21025844..21025868 (25 bp)
AACCGTGGCTTATGAGCGCCGTCGA
LOC_Os09g36430
OsAffx.30151.1.S1_at--125--2811Chr09:21025810..21025834 (25 bp)
AAGATGCTCATGGTGCGAACGCGAA
LOC_Os09g36430
Target Sequence 
GAGAGATGGACTCGGATTCAAGCACTTAGTTTTTAATTTGCCTGGAAGGGAAGGAAAGAAGACAACTGATCGATACAAGC
AGTCACCAGATATCATCATCCATTCATCATCTCTGCAATTCAGTTCAGCGGCATCGATCACCATGAGCAGCAGCATCAAG
GATGAGATCGACGCTGCGTTCGCGGCGGGAGCAATGCCGCCGGAGTGGCGGCCGAGGCTGCTGGCGTCGCCGCGGCTGGG
CGAGCGCGACGTCGACAGGATCGCGGCGTCCATCGCCGAGATCCATTGGAACCTGCAGCTCGACGGGTCGACCCAGCTGT
CCGTCGCTTGTGTGGCGTTCTGGTTCGTCGTCGGCGTGCTGGTCTTATGCGTGGCTGGCCTTTTCTTCCTCGAAAACGAC
TACATGAGTGGACCGTTCGCCGTGGTTGGGGCCGTGCCCTGCGTAGTGATCACTCCTATAGTAACCGTGGCTTATGAGCG
CCGTCGACGGAGGGCCAAGATGCTCATGGTGCGAACGCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis