Browse Element(s) Details


Os.37915.1.S1_at

Description gb:AK069888.1
DB_XREF= gi:32979912
TID=Os.37915.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039O04, full insert sequence.
FL= gb:AK069888.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3646010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36420Os.35850.1.S1_at11/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.12190.1.S1_at4/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.30150.5.S1_s_at2/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420Os.57460.1.S1_x_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36420OsAffx.22448.1.S1_at1/119+21011394..21019524Hsp90 protein, expressed
LOC_Os09g36430OsAffx.30151.1.S1_at10/119+21025775..21026385hypothetical protein
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37915.1.S1_at--251--1451Chr09:21039420..21039444 (25 bp)
AGAAGCGGTTGGTACAGGACACAGA
LOC_Os09g36460
Os.37915.1.S1_at--1077--7831Chr09:21039430..21039454 (25 bp)
GGTACAGGACACAGAGGCCTCTCTG
LOC_Os09g36460
Os.37915.1.S1_at--226--10731Chr09:21039464..21039488 (25 bp)
TTGCTTCTCTACCTTCAGTAACTTA
LOC_Os09g36460
Os.37915.1.S1_at--517--2511Chr09:21039483..21039507 (25 bp)
AACTTACAAGGCAGAAGGTGTCCAA
LOC_Os09g36460
Os.37915.1.S1_at--844--7271NONE
GTCCAAGATGGCAACACAGAGCAAT
NONE
Os.37915.1.S1_at--380--7771Chr09:21039644..21039668 (25 bp)
GGTGAATCTTTGATTGCACTCCCCT
LOC_Os09g36460
Os.37915.1.S1_at--437--9771Chr09:21040764..21040786 (23 bp)
TAAGGTTTGCCCGATGTGCAGCGCG
LOC_Os09g36460
Os.37915.1.S1_at--59--7351Chr09:21040777..21040801 (25 bp)
GTGCAGCGCGGAAGTTTCCACATCG
LOC_Os09g36460
Os.37915.1.S1_at--359--10671Chr09:21040792..21040816 (25 bp)
TTCCACATCGGACAGCAACCAGGCA
LOC_Os09g36460
Os.37915.1.S1_at--192--2651Chr09:21040808..21040832 (25 bp)
AACCAGGCATGACCAATCTTTGCTG
LOC_Os09g36460
Os.37915.1.S1_at--1012--5851Chr09:21040818..21040842 (25 bp)
GACCAATCTTTGCTGCCATTATGGG
LOC_Os09g36460
Target Sequence 
AGAAGCGGTTGGTACAGGACACAGAGGCCTCTCTGCTGCTACACTTGCTTCTCTACCTTCAGTAACTTACAAGGCAGAAG
GTGTCCAAGATGGCAACACAGAGCAATGTGTTATTTGTCGTGTGGAATTTGAGGATGGTGAATCTTTGATTGCACTCCCC
TGCAAGCATTCATACCATCCTGAGTGCATAAACCAATGGCTTCAAATAAATAAGGTTTGCCCGATGTGCAGCGCGGAAGT
TTCCACATCGGACAGCAACCAGGCATGACCAATCTTTGCTGCCATTATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis