Browse Element(s) Details


Os.54288.1.S1_at

Description gb:AK103074.1
DB_XREF= gi:32988283
TID=Os.54288.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54288 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118C13, full insert sequence.
FL= gb:AK103074.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3653011/11exodeoxyribonuclease III family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os09g36560OsAffx.30155.1.S1_x_at10/119+21088365..21090101Thaumatin-like protein 1 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54288.1.S1_at--454--6311Chr09:21064280..21064304 (25 bp)
GATGACCCTACCACTTTGCAAAGGA
LOC_Os09g36530
Os.54288.1.S1_at--625--5631Chr09:21064257..21064281 (25 bp)
GACACCATGAACCTTGCATTCCAAG
LOC_Os09g36530
Os.54288.1.S1_at--121--231Chr09:21064212..21064236 (25 bp)
ATATTGGTCGCCTATTCTATGTCTG
LOC_Os09g36530
Os.54288.1.S1_at--132--9651Chr09:21064054..21064077 (24 bp)
TCAGGGACCTGCATCAAACCAAGAA
LOC_Os09g36530
Os.54288.1.S1_at--532--3171Chr09:21064026..21064050 (25 bp)
AATTGTGGTCACTTTCAGTGGGCCA
LOC_Os09g36530
Os.54288.1.S1_at--221--5551Chr09:21063985..21064009 (25 bp)
GAAACGCCGGTGACTAATTTCTCTT
LOC_Os09g36530
Os.54288.1.S1_at--651--271Chr09:21063861..21063977 (25 bp)
ATAGGTGTAACACTCACTCCTGGAC
LOC_Os09g36530
Os.54288.1.S1_at--420--1731Chr09:21063690..21063714 (25 bp)
ACCATGGCCTCCTTTGTTGTTTACA
LOC_Os09g36530
Os.54288.1.S1_at--772--8591Chr09:21063651..21063675 (25 bp)
TGGTCAAATGCCACCTTGTAGCTTT
LOC_Os09g36530
Os.54288.1.S1_at--140--10311Chr09:21063613..21063637 (25 bp)
TTTCTCGGGTTTGGCTAGCTTATGT
LOC_Os09g36530
Os.54288.1.S1_at--1033--10111Chr09:21063593..21063617 (25 bp)
TATGTTTGCAACTACCCTTGGATGT
LOC_Os09g36530
Target Sequence 
GATGACCCTACCACTTTGCAAAGGACACCATGAACCTTGCATTCCAAGGTCTGTGAAGAAAGGCTCTAATATTGGTCGCC
TATTCTATGTCTGTGCCCGTGCTCAGGGACCTGCATCAAACCAAGAAGCAAATTGTGGTCACTTTCAGTGGGCCACTGTT
AAGTCTAAAGAGAAACGCCGGTGACTAATTTCTCTTTTATCGCATAGGTGTAACACTCACTCCTGGACATGTGTGTGTCA
CTTGTTTCTATACACATGAAATGCTGATGTTCTTCTCGGGAGCAAGCTGGTATTTGAGTCAGCAACTCGGCATTAATCTC
TAGTTATGCATTACGCAGGTACATAATTTAATTTTGTGTTTAATTTAGATGGCTACCATGGCCTCCTTTGTTGTTTACAT
ATGTTATATTGTTTGGTCAAATGCCACCTTGTAGCTTTCTCGTAGTTTTGTTTTCTCGGGTTTGGCTAGCTTATGTTTGC
AACTACCCTTGGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54288.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis