Browse Element(s) Details


OsAffx.30152.1.S1_s_at

Description tigr:9637.m03074
TID=OsAffx.30152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3649011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36440Os.10851.1.S1_at11/119+21028491..21031530Transcription initiation factor IIB, putative, expressed
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0031225cellular_componentanchored to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30152.1.S1_s_at--308--10671Chr09:21055041..21055065 (25 bp)
TTCCGGCGCACCAGGTGGCATAGCA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--509--1531Chr09:21055241..21055265 (25 bp)
AGCAGGGCGCGTTTGGACAGCACCA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--636--4551Chr09:21055247..21055271 (25 bp)
GCGCGTTTGGACAGCACCAGGTGCT
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--490--1691Chr09:21055286..21055310 (25 bp)
AGCCATTGGAGGACAGCTCCGGCGA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--910--9271Chr09:21055348..21055372 (25 bp)
TCCGGCTTGGTTTCTCTACTGATTG
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--852--8571Chr09:21055355..21055379 (25 bp)
TGGTTTCTCTACTGATTGCACTTGG
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--343--10431Chr09:21055418..21055442 (25 bp)
TTATGGTGTTTCTTTCCTTGTCAGT
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--1002--3671Chr09:21055429..21055453 (25 bp)
CTTTCCTTGTCAGTGATTTGTCAAA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--397--2351Chr09:21055465..21055489 (25 bp)
AAAGCATGTCATGTTCGTAGAAAGA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--545--6691Chr09:21055512..21055536 (25 bp)
GTTGCCAGAGTGTAAGTAGGGATTA
LOC_Os09g36490
OsAffx.30152.1.S1_s_at--832--9011Chr09:21055556..21055580 (25 bp)
TGCAAATGTACTATGTATATCCCTG
LOC_Os09g36490
Target Sequence 
TTCCGGCGCACCAGGTGGCATAGCACTCCCGCCTGCTGCGCCCGCCGGCGGCGGCATGCCGCAGCAGCACGGTTCGCCGC
ACCACCTGCCACTGGGAGCGTCGCCGCCGCCGGAGGCCGCCGCGGTGCCGGACGCGCTGGCGCCGAGCGCTGGCCATGGC
GCGGCGGCGGGGGGGCTCCCGATCGGGGGGCAGGGGCAGCAGCAGGGCGCGTTTGGACAGCACCAGGTGCTGAACGGCGC
GGGGCAGCCATTGGAGGACAGCTCCGGCGAGCGGCCAAGAGGAGCGCACGCCGCCGTCGTCGTCACCTCCGGCTTGGTTT
CTCTACTGATTGCACTTGGATTTGGCTTCTAAATTTTACCCCCTTTCTTGAAGATTTTTATGGTGTTTCTTTCCTTGTCA
GTGATTTGTCAAATTTGTAGCAAGAAAGCATGTCATGTTCGTAGAAAGACAATTTGTGTGACATTGTTGTTGTTGCCAGA
GTGTAAGTAGGGATTATAATAATGTTTTGTGTTCTTGCAAATGTACTATGTATATCCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30152.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis