Browse Element(s) Details


OsAffx.30153.2.S1_x_at

Description tigr:9637.m03076
TID=OsAffx.30153.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3651011/11hypothetical protein
LOC_Os11g374002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g457701/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36450Os.9513.1.S1_at11/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36450Os.9513.1.S2_a_at10/119+21032598..21036014Triosephosphate isomerase, chloroplast precursor, putative, expressed
LOC_Os09g36460Os.37915.1.S1_at10/119+21037643..21041112Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36470Os.56554.1.S1_at11/119+21045812..21049546retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os09g36480Os.11434.1.S1_at11/119+21050153..21053503XAP5 protein, expressed
LOC_Os09g36490OsAffx.30152.1.S1_s_at11/119+21054103..21055610expressed protein
LOC_Os09g36500Os.9138.1.S1_at11/119+21056064..21056955Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g36510OsAffx.30153.2.S1_x_at11/119+21059113..21059642hypothetical protein
LOC_Os09g36520Os.5337.1.S1_at7/119+21060635..21062217Ki1 protein, putative, expressed
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30153.2.S1_x_at--557--5831Chr09:21059146..21059170 (25 bp)
GACCGGTTCATCGTGATCCTCTTCT
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--331--8573Chr11:21583788..21583812 (25 bp)
TGGATCCAGCGTGGACGTCGTCGAT
LOC_Os11g37400
OsAffx.30153.2.S1_x_at--491--3392Chr11:21583794..21583818 (25 bp)
CAGCGTGGACGTCGTCGATGGAGGC
LOC_Os11g37400
OsAffx.30153.2.S1_x_at--730--491Chr09:21059412..21059436 (25 bp)
ATCGGCTGGGATGGCAGCACAAACA
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--960--8631Chr09:21059418..21059442 (25 bp)
TGGGATGGCAGCACAAACACCACCA
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--484--7651Chr09:21059419..21059443 (25 bp)
GGGATGGCAGCACAAACACCACCAC
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--1131--7531Chr09:21059561..21059585 (25 bp)
GGGCCTCGGTTGTGCAGCTCCTGTC
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--312--3972Chr09:21059567..21059591 (25 bp)
CGGTTGTGCAGCTCCTGTCCTGCCG
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--560--8711Chr09:21059582..21059606 (25 bp)
TGTCCTGCCGTCTGCCGCAGCTAGG
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--53--9191Chr09:21059587..21059611 (25 bp)
TGCCGTCTGCCGCAGCTAGGGCCAA
LOC_Os09g36510
OsAffx.30153.2.S1_x_at--1103--4491Chr09:21059588..21059612 (25 bp)
GCCGTCTGCCGCAGCTAGGGCCAAC
LOC_Os09g36510
Target Sequence 
GACCGGTTCATCGTGATCCTCTTCTCCTCCACCTGCCGCAATGGATCCAGCGTGGACGTCGTCGATGGAGGCGGCAAGAG
CGGCAAGAAGCCCCAAGGCGGCGGCGGCGAGGGTGGCGGCGCGGCGGACCACCACCGCCAGCACGTGGCGCACATCGGCT
GGGATGGCAGCACAAACACCACCACCAGCCTCCGCTCATGGAACCGCGCCGCGCCGCGGTCCTCCTCCTCCTCCACCACC
ACCGCGTCCACCTCCTCAGCCTTGGCGGCGCCGGCGACATCAAGAAGGAGTCGGCGCCGGCGGGGCCTCGGTTGTGCAGC
TCCTGTCCTGCCGTCTGCCGCAGCTAGGGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30153.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis