Browse Element(s) Details


OsAffx.30155.1.S1_x_at

Description tigr:9637.m03081
TID=OsAffx.30155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161593 putative thaumatin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3656010/11Thaumatin-like protein 1 precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36530Os.54288.1.S1_at11/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36530OsAffx.13934.1.S1_at1/119+21063533..21068244exodeoxyribonuclease III family protein, expressed
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os09g36560OsAffx.30155.1.S1_x_at10/119+21088365..21090101Thaumatin-like protein 1 precursor, putative
LOC_Os09g36569NANA9+21096640..21097232NA
LOC_Os09g36580Os.52573.1.S1_at11/119+21097786..21100718Thaumatin family protein, expressed
LOC_Os09g36590NANA9+21104147..21107795retrotransposon protein, putative, LINE subclass
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30155.1.S1_x_at--597--1931Chr09:21088857..21088881 (25 bp)
ACGGCTCCAACCTGCCGATGGTGGT
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--803--9411Chr09:21088926..21088950 (25 bp)
TCGTCGACCTGAACGGGCCGTGCCC
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--944--8271Chr09:21088985..21089009 (25 bp)
GGCATCGCCTGCAGGAGCGCGTGCG
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--613--8251Chr09:21089018..21089042 (25 bp)
GGCACGCCGGAGTACTGCTGCAACG
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--352--6771Chr09:21089175..21089199 (25 bp)
GTTACCTCGTCGTCTTCTGCCCTAT
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--355--471NONE
ATCTCCAGCCTCAAGTCGTCGGTGG
NONE
OsAffx.30155.1.S1_x_at--138--9231Chr09:21089856..21089880 (25 bp)
TCCAGCCTCAAGTCGTCGGTGGGCG
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--73--4711Chr09:21089881..21089905 (25 bp)
GCGGCGCCACGAATCCGTCGGCGTC
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--682--7571Chr09:21089913..21089937 (25 bp)
GGGCTGCCTCTCATCAACGACACGG
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--574--8331Chr09:21089914..21089938 (25 bp)
GGCTGCCTCTCATCAACGACACGGT
LOC_Os09g36560
OsAffx.30155.1.S1_x_at--1114--3932Chr09:21089972..21089996 (25 bp)
CGGCTACTACGACGCGTCGAGCAGC
LOC_Os09g36560
Target Sequence 
ACGGCTCCAACCTGCCGATGGTGGTGGTTCCCCAGGGCGGCGGCGCGGCGTGCGGCGCGACGGGGTGCCTCGTCGACCTG
AACGGGCCGTGCCCCGCCGACCTGAAGGTCGCCGGCGCCGACGGCGCCGGCATCGCCTGCAGGAGCGCGTGCGAGGCGTT
CGGCACGCCGGAGTACTGCTGCAACGGCGCGTTCGGCACGCCGGCGACGTGCCGGCCGTCGGCGTACTCGCAGTTCTTCA
AGAACGCGTGCCCGCGCGCCTACAGCTACGCCTACGACGACGCCACGTCCACATTCACCTGCGCCTCCGGCACCGCCAGT
TACCTCGTCGTCTTCTGCCCTATCATCTCCAGCCTCAAGTCGTCGGTGGGCGGCGGCGCCACGAATCCGTCGGCGTCGGG
GACGGGGCTGCCTCTCATCAACGACACGGTCTCCTTCCTCAACCGCGGCGGCGGCGGCAACGGCGGCTACTACGACGCGT
CGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30155.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis