Browse Element(s) Details


Os.52573.1.S1_at

Description gb:AK068084.1
DB_XREF= gi:32978102
TID=Os.52573.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013131N11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013131N11, full insert sequence.
FL= gb:AK068084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3658011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36540OsAffx.5106.1.S1_at2/119+21069425..21077599retrotransposon protein, putative, unclassified
LOC_Os09g36550OsAffx.30154.1.S1_at9/119+21081998..21085571armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os09g36560OsAffx.30155.1.S1_x_at10/119+21088365..21090101Thaumatin-like protein 1 precursor, putative
LOC_Os09g36569NANA9+21096640..21097232NA
LOC_Os09g36580Os.52573.1.S1_at11/119+21097786..21100718Thaumatin family protein, expressed
LOC_Os09g36590NANA9+21104147..21107795retrotransposon protein, putative, LINE subclass
LOC_Os09g36600Os.8760.1.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36600Os.8760.2.S1_a_at11/119+21110450..21113849Nodulin-like family protein, expressed
LOC_Os09g36610Os.46012.2.S1_x_at8/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.27088.1.A1_x_at6/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g36610Os.46012.3.S1_x_at4/119+21116954..21122562retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52573.1.S1_at--246--971Chr09:21100148..21100172 (25 bp)
AGGACGACTCATGGCTGGCGAGCTT
LOC_Os09g36580
Os.52573.1.S1_at--525--9371Chr09:21100207..21100231 (25 bp)
TCGACGTCGTTGTTGCTGCAAGCCA
LOC_Os09g36580
Os.52573.1.S1_at--1046--2951Chr09:21100248..21100272 (25 bp)
AATGGCTTTGCTTGTGCTACACTAG
LOC_Os09g36580
Os.52573.1.S1_at--512--2231Chr09:21100286..21100310 (25 bp)
AAATTGGCCGGATATTTCAGTCAAA
LOC_Os09g36580
Os.52573.1.S1_at--999--5311Chr09:21100374..21100398 (25 bp)
GAAGTGGCCGGTGTTGCTTTCCGAT
LOC_Os09g36580
Os.52573.1.S1_at--800--5411Chr09:21100440..21100464 (25 bp)
GAAGCGATATTCTTTAGCCTTTTGC
LOC_Os09g36580
Os.52573.1.S1_at--933--2691Chr09:21100483..21100507 (25 bp)
AAGCTCTGTGGACTTCTAGTGGTAT
LOC_Os09g36580
Os.52573.1.S1_at--451--7451Chr09:21100522..21100546 (25 bp)
GTGTCACCGTGTCAGTCAACAAGAA
LOC_Os09g36580
Os.52573.1.S1_at--488--5731Chr09:21100557..21100581 (25 bp)
GACTGCAATAGTTTTCTGCCTTTCA
LOC_Os09g36580
Os.52573.1.S1_at--666--4451Chr09:21100574..21100598 (25 bp)
GCCTTTCAGGAAACTTGCTACTTTA
LOC_Os09g36580
Os.52573.1.S1_at--230--131Chr09:21100658..21100682 (25 bp)
ATTCATGTCACACGCTGTATTCCAA
LOC_Os09g36580
Target Sequence 
AGGACGACTCATGGCTGGCGAGCTTGGCCACCGGCGAGGTCGACGGCGCGGCGCCGGCGTCGACGTCGTTGTTGCTGCAA
GCCACATTAGCAGTGGCAGTAATGGCTTTGCTTGTGCTACACTAGCTAGCTAAAGATTAAATTGGCCGGATATTTCAGTC
AAAAAAAAAAGGCCGGATAGGAGATGACCCTGATGTGGCAAGAGGATGGAGATTCTTGATCGGTAGGAAGTGGCCGGTGT
TGCTTTCCGATTTTTTTAAAAAAACAAGATTGGAGCAGTAGGATGAGGACGTGAAGCGATATTCTTTAGCCTTTTGCTTG
TGGATAGAAGNATTGAAGCTCTGTGGACTTCTAGTGGTATTATGACTTGTTAAGGTGTCACCGTGTCAGTCAACAAGAAC
TCTCTGCAAGACTGCAATAGTTTTCTGCCTTTCAGGAAACTTGCTACTTTAGTTACTTCTTGTGTATAGATTTTTGTCTT
TTTATTATTATTTTTTTNNGCCCCCACATATATTCATGTCACACGCTGTATTCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis