Browse Element(s) Details


Os.24021.1.S1_x_at

Description gb:BP185037
DB_XREF= gi:32948465
DB_XREF=BP185037
TID=Os.24021.1
CNT=9
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.24021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) partial mRNA for TA6 protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0208011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24021.1.S1_x_at--1020--6111Chr03:638316..638340 (25 bp)
GAGGGTTCCATACTATAACCGGTTG
LOC_Os03g02080
Os.24021.1.S1_x_at--925--3491Chr03:638358..638382 (25 bp)
CATGGCCTTGGCTTGGTACAATGAA
LOC_Os03g02080
Os.24021.1.S1_x_at--448--1871Chr03:638516..638540 (25 bp)
ACGAGTGTGCTCTTGCATGATGTAT
LOC_Os03g02080
Os.24021.1.S1_x_at--1013--8011Chr03:638555..638579 (25 bp)
GGAGGTGTTTGCCATGTGCACATTA
LOC_Os03g02080
Os.24021.1.S1_x_at--847--4811Chr03:638617..638641 (25 bp)
GCTCTTCTTCGCTGAATTGGCTTTA
LOC_Os03g02080
Os.24021.1.S1_x_at--784--5851Chr03:638677..638701 (25 bp)
GACCACTGCCTGCTGTATTATTGAT
LOC_Os03g02080
Os.24021.1.S1_x_at--597--10771Chr03:638697..638716 (20 bp)
TTGATGGCAACTGTCTTGGTGGTTT
LOC_Os03g02080
Os.24021.1.S1_x_at--7--5291Chr03:639432..639456 (25 bp)
GAATGTGCTGCTCAATGGATGTTTT
LOC_Os03g02080
Os.24021.1.S1_x_at--910--5511Chr03:639502..639526 (25 bp)
GAAAAGATTAAGCACCCCACAGGAA
LOC_Os03g02080
Os.24021.1.S1_x_at--956--8011Chr03:639538..639562 (25 bp)
GGAGGTCATTATGCCGAAGACTATT
LOC_Os03g02080
Os.24021.1.S1_x_at--153--7051Chr03:639654..639678 (25 bp)
GTAAAGCATCCTACCACTATACATG
LOC_Os03g02080
Target Sequence 
GAGGGTTCCATACTATAACCGGTTGAACAAGAAAAGAGCTAACATGGCCTTGGCTTGGTACAATGAAAACAACCCGGAAG
ATTGCTATGAATTTACGAGTGTGCTCTTGCATGATGTATGCAATTTTTGTGATGGAGGTGTTTGCCATGTGCACATTAAT
TTTAAGGCAAGGAATGTGACAACAAATTCAGAGGAGCTCTTCTTCGCTGAATTGGCTTTAATCAACAATGTTTTCGATCA
ATATAGTGGATATACGACCACTGCCTGCTGTATTATTGATGGCAACTGTCTTGGTGGTTTGAGGAATGTGCTGCTCAATG
GATGTTTTTTGCGAGAGGAGCGTTATGATGAAAAAAATTGCTACGCATGTGATGAAAAGATTAAGCACCCCACAGGAAGT
ACCTACAAAGGAGGTCATTATGCCGAAGACTATTTAGTACAGGGAATCTTATGAATCACAGATATTTATGTTTTCATGTA
ATCTATTAGTACATCATTTTGATGGTTTGGGAGCTGTATGAACTAGTAAAGCATCCTACCACTATACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24021.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis