Browse Element(s) Details


Os.49121.1.A1_at

Description gb:AK067241.1
DB_XREF= gi:32977259
TID=Os.49121.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49121 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096G22, full insert sequence.
FL= gb:AK067241.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0208011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49121.1.A1_at--291--6951Chr03:639180..639204 (25 bp)
GTAGAATAGCAGATTGGGTCCCAAC
LOC_Os03g02080
Os.49121.1.A1_at--239--7711Chr03:639195..639219 (25 bp)
GGGTCCCAACATTCATGCACATAGG
LOC_Os03g02080
Os.49121.1.A1_at--289--131Chr03:639205..639229 (25 bp)
ATTCATGCACATAGGTGGTGTCACC
LOC_Os03g02080
Os.49121.1.A1_at--957--7731Chr03:639218..639242 (25 bp)
GGTGGTGTCACCGATGTACCAGTAA
LOC_Os03g02080
Os.49121.1.A1_at--690--2891Chr03:639242..639266 (25 bp)
AAGGTAGCATATGTACTTTACTGTT
LOC_Os03g02080
Os.49121.1.A1_at--152--7011Chr03:639254..639278 (25 bp)
GTACTTTACTGTTTTCTCTCTCAGG
LOC_Os03g02080
Os.49121.1.A1_at--439--8511Chr03:639280..639304 (25 bp)
TGGCAATATCACTGGTAACAAGTTT
LOC_Os03g02080
Os.49121.1.A1_at--526--5291Chr03:639323..639347 (25 bp)
GAATGGTTGTGCTTGCTTTCTATTA
LOC_Os03g02080
Os.49121.1.A1_at--232--4931Chr03:639333..639357 (25 bp)
GCTTGCTTTCTATTAGTTGTCTTGT
LOC_Os03g02080
Os.49121.1.A1_at--948--6631Chr03:639348..639372 (25 bp)
GTTGTCTTGTTGAATACTGGTGTAT
LOC_Os03g02080
Os.49121.1.A1_at--413--2831Chr03:639407..639431 (25 bp)
AAGTTTGTATCGTAGGTGGTTTGAG
LOC_Os03g02080
Target Sequence 
GTAGAATAGCAGATTGGGTCCCAACATTCATGCACATAGGTGGTGTCACCGATGTACCAGTAAAGGTAGCATATGTACTT
TACTGTTTTCTCTCTCAGGATGGCAATATCACTGGTAACAAGTTTTTGTGGAGTGCTCAATATGAATGGTTGTGCTTGCT
TTCTATTAGTTGTCTTGTTGAATACTGGTGTATAAACATTTTGTAGTTTACCTTTGAGATGCTTATAAAGTTTGTATCGT
AGGTGGTTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49121.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis