Browse Element(s) Details


Os.7443.1.S1_s_at

Description gb:AK070403.1
DB_XREF= gi:32980427
TID=Os.7443.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023050B17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050B17, full insert sequence.
FL= gb:AK070403.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0202011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01980Os.49574.1.S1_at11/113+588226..592776kinase interacting protein, putative, expressed
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7443.1.S1_s_at--908--5971Chr03:617369..617393 (25 bp)
GAGAAATCTCTTGAGCTACACTTCA
LOC_Os03g02020
Os.7443.1.S1_s_at--750--2031Chr03:617388..617412 (25 bp)
ACTTCACAGTTGATCCCGTGGGTAA
LOC_Os03g02020
Os.7443.1.S1_s_at--840--6931Chr03:617422..617446 (25 bp)
GTAGATTCTGAGCACCTGACAAAAT
LOC_Os03g02020
Os.7443.1.S1_s_at--19--9891Chr03:617534..617558 (25 bp)
TACATAGGCGATTGTGTTCATCACA
LOC_Os03g02020
Os.7443.1.S1_s_at--566--10551Chr03:617550..617574 (25 bp)
TTCATCACATAAACGCCTTCCTTTT
LOC_Os03g02020
Os.7443.1.S1_s_at--72--8791Chr03:617613..617637 (25 bp)
TGTTTTATCCTGTCATGAATGTACC
LOC_Os03g02020
Os.7443.1.S1_s_at--182--5271Chr03:617629..617653 (25 bp)
GAATGTACCTCAATCGCAAGATGTA
LOC_Os03g02020
Os.7443.1.S1_s_at--519--10231Chr03:617686..617710 (25 bp)
TATTGGTCCTGACATGTTCCTATCC
LOC_Os03g02020
Os.7443.1.S1_s_at--104--6691Chr03:617701..617725 (25 bp)
GTTCCTATCCTAATTAATCTCCTGT
LOC_Os03g02020
Os.7443.1.S1_s_at--12--6351Chr03:617808..617832 (25 bp)
GATGCGTACGTATGCTCATGAATGA
LOC_Os03g02020
Os.7443.1.S1_s_at--850--5271Chr03:617827..617851 (25 bp)
GAATGAATTCGCAAGCGATCGCCGC
LOC_Os03g02020
Target Sequence 
GAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAGATTCTGAGCACCTGACAAAATAT
TCAGTCCTGGATTGGACGTATATATTGTTGGTAAACTCCTGAGTTGCTGATGAGGGAAAAGTATTGAAATGAAATCTTGA
GGTTTTACATAGGCGATTGTGTTCATCACATAAACGCCTTCCTTTTCCTTGCCCGGAATGCAAGAACGAGAGATACCTTG
AAAATGTTTTATCCTGTCATGAATGTACCTCAATCGCAAGATGTACAGTGTGGTTGGACCGGCTGGTTGGTTAATTATAT
TGGTCCTGACATGTTCCTATCCTAATTAATCTCCTGTTTGTGGGGAAAACGAAGAANAAGTATGTCATTTTNATCTAGCT
GNGNNGCCTGCATNTGCATGCTAGCTAGCTANNNNNCTAGCTACTGTAAATGATGCGTACGTATGCTCATGAATGAATTC
GCAAGCGATCGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7443.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis