Browse Element(s) Details


Os.52141.1.S1_at

Description gb:AK065147.1
DB_XREF= gi:32975165
TID=Os.52141.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52141 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002A23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002A23, full insert sequence.
FL= gb:AK065147.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0201011/11DNA cytosine methyltransferase Zmet3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01970Os.7734.2.S1_x_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.7734.1.S1_at11/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01970Os.54579.1.S1_at1/113+580852..587675THO complex subunit 1, putative, expressed
LOC_Os03g01980Os.49574.1.S1_at11/113+588226..592776kinase interacting protein, putative, expressed
LOC_Os03g01990NANA3+599568..601964LysM domain containing protein, expressed
LOC_Os03g02010Os.52141.1.S1_at11/113+610993..614678DNA cytosine methyltransferase Zmet3, putative, expressed
LOC_Os03g02020Os.7443.1.S1_s_at11/113+615070..617856expressed protein
LOC_Os03g02030Os.9990.1.S1_at11/113+618942..623961FolC bifunctional protein, expressed
LOC_Os03g02040Os.8597.1.S1_at11/113+625299..627814Remorin, C-terminal region family protein, expressed
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006346biological_processmethylation-dependent chromatin silencing
GO:0005634cellular_componentnucleus
GO:0003886molecular_functionDNA (cytosine-5-)-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
GO:0008170molecular_functionN-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52141.1.S1_at--441--1011Chr03:614101..614125 (25 bp)
AGGTACAGGGCTCTCGGGAATTCAT
LOC_Os03g02010
Os.52141.1.S1_at--818--3451Chr03:614106..614130 (25 bp)
CAGGGCTCTCGGGAATTCATTCCAA
LOC_Os03g02010
Os.52141.1.S1_at--748--8691Chr03:614157..614181 (25 bp)
TGTGCTGAGGGACCTGTTTCCCAAT
LOC_Os03g02010
Os.52141.1.S1_at--332--2991Chr03:614188..614212 (25 bp)
AATGTCTTATCCCTGTTTTCTGGTA
LOC_Os03g02010
Os.52141.1.S1_at--1079--3411Chr03:614222..614246 (25 bp)
CAGAGGTAGCTCTCCACAGACTGGG
LOC_Os03g02010
Os.52141.1.S1_at--266--5891Chr03:614307..614331 (25 bp)
GAGCTGGTGGGATCAGACACAAACT
LOC_Os03g02010
Os.52141.1.S1_at--871--3571Chr03:614387..614411 (25 bp)
CATTCATCAGAAGGTTTGGCGGTTT
LOC_Os03g02010
Os.52141.1.S1_at--227--10231Chr03:614401..614425 (25 bp)
TTTGGCGGTTTTGACCTGGTGATTG
LOC_Os03g02010
Os.52141.1.S1_at--1082--1831Chr03:614603..614627 (25 bp)
ACGAAGTTAGAACCTGTTGATTGAT
LOC_Os03g02010
Os.52141.1.S1_at--1088--6591Chr03:614621..614645 (25 bp)
GATTGATATTGCTGAACCTGATGTG
LOC_Os03g02010
Os.52141.1.S1_at--864--8871Chr03:614639..614663 (25 bp)
TGATGTGATGTTATTGCACTCAAAC
LOC_Os03g02010
Target Sequence 
AGGTACAGGGCTCTCGGGAATTCATTCCAAGTTGATACAGTAGCATACCATCTCTCTGTGCTGAGGGACCTGTTTCCCAA
TGGAATGAATGTCTTATCCCTGTTTTCTGGTATTGGAGGAGCAGAGGTAGCTCTCCACAGACTGGGGATACATATGAAAA
CAGTGATCTCTGTTGAGAAATCAGAAGTGAACAGAACGATTCTGAAGAGCTGGTGGGATCAGACACAAACTGGAACGCTG
ATTGAAATCGCCNACGTGCGGCATCTTACTNCTGAAAGAATTGAAACATTCATCAGAAGGTTTGGCGGTTTTGACCTGGT
GATTGGTGGCAGCCCGTGCAACAACCTTGNTGGCAGCAACCGCCATCACCGAGATGGTNTGGAGGGCGAGCACTCCGCGC
TNTTCTACGATTACATTNGAATATTAGAACATGTAAAGGNTACCATGTCAGCAGTNTAGTTTAAGNTATCACATTAACTA
ACTCTGTGNTTTATTGTTGTTAACGAAGTTAGAACCTGTTGATTGATATTGCTGAACCTGATGTGATGTTATTGCACTCA
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis